RNA id: TU313336


Basic Information

Item Value
RNA id TU313336
length 387
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G276208
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5168815 ~ 5169201 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCCTCTCTCAAGAGCCATAAAAGTACTAAAAACATATTTAAAACAGTTCATGCGAGTTCAGTAGTTCTACCTTAATATTATAAAGCGACGAGAATATTTTTGTGTGCCAAAAAAACTAAATAACGACTTTTTTTTAACAATATAGTGATGGGCTGATTTCAAAACACTGCTTCGGAGCTTTACGAATCGAATCAGTGACTCGGAGCGCCAAAGTCACGTGATTTCAGCAGTTTAGCCATTTGATAGGAGATCCGAGTCACTGATTCGATTCGTAAAGCTCATATGCAGGGATTTTTTTCCCTGCATATTTTCTCCCTTTTTTAAAAGAGCACAGAGGAAGACAATTGCTCCAAAGTGCTAGCTGTAGGAGAATGCACACCTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313335 lncRNA downstream 1092 5167032 ~ 5167723 (-) True G276207
TU313332 lncRNA downstream 9097 5159403 ~ 5159718 (-) True G276204
TU313331 lncRNA downstream 9880 5158708 ~ 5158935 (-) True G276203
TU313328 lncRNA downstream 13513 5155036 ~ 5155302 (-) True G276200
TU313217 lncRNA downstream 16306 5138358 ~ 5152509 (-) True G276095
TU313337 lncRNA upstream 784 5169985 ~ 5170452 (-) True G276209
TU313339 lncRNA upstream 2750 5171951 ~ 5173007 (-) False G276210
TU313341 lncRNA upstream 3109 5172310 ~ 5173007 (-) False G276210
TU313343 lncRNA upstream 3599 5172800 ~ 5173505 (-) True G276210
TU313346 lncRNA upstream 7080 5176281 ~ 5176934 (-) True G276213
CI01000069_05100248_05121420.mRNA mRNA downstream 47395 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
CI01000069_05042346_05044105.mRNA mRNA downstream 123580 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
CI01000069_05025745_05032197.mRNA mRNA downstream 136618 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_04996783_05001227.mRNA mRNA downstream 167588 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_04985959_04986408.mRNA mRNA downstream 182407 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_05227862_05278522.mRNA mRNA upstream 58661 5227862 ~ 5278522 (-) True CI01000069_05227862_05278522
CI01000069_05321785_05324036.mRNA mRNA upstream 152070 5321271 ~ 5324097 (-) True CI01000069_05321785_05324036
TU313215 other downstream 182391 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408
TU313201 other downstream 226616 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1361738 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1399595 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1592480 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352

Expression Profile