RNA id: TU313339


Basic Information

Item Value
RNA id TU313339
length 1057
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G276210
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5171951 ~ 5173505 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACATTGTGTTGCCTCCTTCAGAGTCCCTAGATGGTTTGTAAGAGAGGGCCTGGAATACAGGTCTCAGCTCTCCTCTCAAGTCCCTCGAGAGGTTGCAGCCTGCATCTCATTGTCTGCATTGATCTACAGACTGCACAAGGATGATGATCAATATCTGGATTAGTGGAGGCAGGTGTATCTTTGTCTGTCTCTTCTTGGCTTTAACCTCATCACCAAAATGCCAATCCAGTCACAAGCTGGAGAAGATACTGTTGTCTTCGTGTTAGACAAGGCAGACAGTCCTTTACTTTTTCTGTCATTGCTGAGTGCTATATTCACTCATTTGCTCTTGTCTAATGCCAGGACATCAACAGAACTTAACAGAACTGAATGTGTCTCTGCTCACAGCCTCTACACGATATCTACATATCTGTGTTAATTGACGTTTGCAGTTTGCCAGGTTGTGTAGCTCCTGCCTGCCGTTGCTATGGCAGCAATCACAGGGCCTCAGCTGGCGAGTTAGTGCTGCCCTATAGGCTGTCTATCTCGGCGCTCGTTTCTCCAAACCTGACAGCCACCACAGCAGGCCTTTTAAGGGATATTTAATAAGGCAAATAATAATCCCAACATTCTTACTTATTAAACATTTTCTGAAGTTAATGTTTTATTTTATTTTATTTTATTTTATTTTAATTGAGGCATTTTTAGCATCAACTACAATTAATGCTTTTATTTTATTATTCAAATTGATGCATTTGGGCATTCCCTAAGATCAATTGATTTTTTTTTTATTATTATTAATTTAAATGGAAAAGTTTTGGGCCTAAAATGAATGCTCATTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTATTTTTTTTTATTATTATTATTATTTTTTTTAATTAAGTCCTTGATTATGATTTCCCTTTTTTAACTTTAGTTAGTGTGTAATGTTGCTGTTTGAGCATAAACAATGTCTGCAAAGTTACGAAGCTCAAAGTTCAATGCAAAGGGAGATATTTTCTTTTACAAAAATCGCTTTTTAAGCATTACAAATATATATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313337 lncRNA downstream 1499 5169985 ~ 5170452 (-) True G276209
TU313336 lncRNA downstream 2750 5168815 ~ 5169201 (-) True G276208
TU313335 lncRNA downstream 4228 5167032 ~ 5167723 (-) True G276207
TU313332 lncRNA downstream 12233 5159403 ~ 5159718 (-) True G276204
TU313331 lncRNA downstream 13016 5158708 ~ 5158935 (-) True G276203
TU313346 lncRNA upstream 3274 5176281 ~ 5176934 (-) True G276213
TU313347 lncRNA upstream 3960 5176967 ~ 5177346 (-) True G276214
TU313353 lncRNA upstream 12319 5185326 ~ 5185594 (-) True G276220
TU313355 lncRNA upstream 14366 5187373 ~ 5187590 (-) True G276222
TU313232 lncRNA upstream 17061 5190068 ~ 5191527 (-) True G276110
CI01000069_05100248_05121420.mRNA mRNA downstream 50531 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
CI01000069_05042346_05044105.mRNA mRNA downstream 126716 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
CI01000069_05025745_05032197.mRNA mRNA downstream 139754 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_04996783_05001227.mRNA mRNA downstream 170724 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_04985959_04986408.mRNA mRNA downstream 185543 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_05227862_05278522.mRNA mRNA upstream 54855 5227862 ~ 5278522 (-) True CI01000069_05227862_05278522
CI01000069_05321785_05324036.mRNA mRNA upstream 148264 5321271 ~ 5324097 (-) True CI01000069_05321785_05324036
TU313215 other downstream 185527 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408
TU313201 other downstream 229752 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1364874 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1402731 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1595616 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352

Expression Profile