RNA id: TU313346


Basic Information

Item Value
RNA id TU313346
length 654
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G276213
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5176281 ~ 5176934 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGGTTATGCGACAACAGTGGGAAACTCTGTATATTTGTGCAAAGTGCGCATGTCAAACTTGTGACATAAACACGCATATCAAGCGTTCATGTAAGCACTATGTTCGGATTCATCAATCGGAATGATTTCACTCAGATTGAAACAAAAATTGTCCATGTAAACGTGGCTAGTGTTCGCCAAGGTGTTGCTAAGATGTTCTAAATGGTGTTTGGCACATTGCTAAGCGGTTGCTAGGGTGAATTCTAGGCGATTGCTTACTTTGCCCGTTTTCTTCACCATATTTTCACCTGCTTTCTCCATTTTTTTTTTTTTTCACATGTTTTCTCCAACACTATTGCTGCCCATATTCTCCAGCACTTTTTGCCTGTTTTGTCCACCGGTTTCTAATATCTACCATAGTTAAAAGTTTTATCACTTAGAAAAATAATCACATCGCACAAACAGGCAGTCTTACGAATAGTACAGGTTATGTGGTCATGTTATCAAAAATTTAGCAGGCAAAAAAGGTCCATATTTTGTTGTCAGTATTGTAGCAAAGTATGAATCATAGATCAAGCAGCTTTCTGTTGGTCAACACAGTGAATCAGCATGACTGACTCGAACCCATTGCGAAACCTGCTTGGGGAAATATTTCAGCCTGATACGAAATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313343 lncRNA downstream 2776 5172800 ~ 5173505 (-) True G276210
TU313339 lncRNA downstream 3274 5171951 ~ 5173007 (-) False G276210
TU313341 lncRNA downstream 3274 5172310 ~ 5173007 (-) False G276210
TU313337 lncRNA downstream 5829 5169985 ~ 5170452 (-) True G276209
TU313336 lncRNA downstream 7080 5168815 ~ 5169201 (-) True G276208
TU313347 lncRNA upstream 33 5176967 ~ 5177346 (-) True G276214
TU313353 lncRNA upstream 8392 5185326 ~ 5185594 (-) True G276220
TU313355 lncRNA upstream 10439 5187373 ~ 5187590 (-) True G276222
TU313232 lncRNA upstream 13134 5190068 ~ 5191527 (-) True G276110
TU313357 lncRNA upstream 16702 5193636 ~ 5194936 (-) False G276224
CI01000069_05100248_05121420.mRNA mRNA downstream 54861 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
CI01000069_05042346_05044105.mRNA mRNA downstream 131046 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
CI01000069_05025745_05032197.mRNA mRNA downstream 144084 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_04996783_05001227.mRNA mRNA downstream 175054 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_04985959_04986408.mRNA mRNA downstream 189873 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_05227862_05278522.mRNA mRNA upstream 50928 5227862 ~ 5278522 (-) True CI01000069_05227862_05278522
CI01000069_05321785_05324036.mRNA mRNA upstream 144337 5321271 ~ 5324097 (-) True CI01000069_05321785_05324036
TU313215 other downstream 189857 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408
TU313201 other downstream 234082 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1369204 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1407061 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1599946 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352

Expression Profile