RNA id: TU313360


Basic Information

Item Value
RNA id TU313360
length 1893
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G276224
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5193636 ~ 5195528 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCACTTCGATTGGAATTTGCCCTAATTTATTCGTGAGTCATGCAACCGATTCGTTCAAAACATTGATTCAATCAGGAGGGAAACACCACTGCTGTGATTTGATGGAAAGGCGCGCGACGGTTAATTCTGCTTTGACTTGGAACTGTTTTCACTGGCAGAGCAAAAATACACCAAAAAAAACTGGAAACATTGTGTCTAAAAGGTAAGTTACTCTACAAATTCGTTGTTTATTAAAAATATAACACTCACAATTGTGTTGTTCTGTGATTATCTGCGGCCTCGTGCCTACTGATATTCACAACCCCAATCTTGCTCAGTTGTTTGTGGAAAATGTTTATTAAAATGAATAAACTGATAAATTATTGTTTAAGTGGCACTATCCTCCATACATAACCTGTGCATTCTTGCTATTTATTTGGCTGACTGTTGTGCTTGGTTGAAACGCAGTGGTCTGTCCCGTAGACCTCGTTGACGGATTGCTTCTAACAGCTAACTTGAGGCTGGTAAGCAGGGATAACTCTCTAACCCCACTAATCGGCTCCCAAGAGGCCATAACCTCACATGCAAACTTGCACGTAGCATTGTGTTGTGTGTATGTTATGTTATGGAAGAAGGGAATATCTATCCGTCTGTAACTTACTGTAGCTATATATTGAAGTAGTGGTCCAAAGCTTCAGTGCTTTGTTGTCAGGTATGAGTCAACTATATAAGCTTATGCAGTTTGTCACAGTAAGCAGAGACTTGCCCCTGTGAATGATGTGGGTTGCCAAGGAAACAGCCTCATTTTTAGGTAAATTACTCTACTTGGCACTCGACAAAAGTGCAATTAGCTCACCAGTGGCCTGAGCTGAAGCACAATTAAAACCCAGAGGAGATTTAAAGGAGCAAAGAGGATCATGGGTATCTGACAGCTTGCTTGTTCCTAATCTCCTTGTTGCAGGGGGGTCCCTCTTTGTGTAGTTCTTTCTGAACACACGCGGTGAGGAGGAGATGGCTTTAATTATGCAGTTTGATTCAGAATATTCTGCAAAGAACCATATGGGACTTACCTTGTTAAATAATGACTTTTGAAAGCAAAAATCACTTGCATTCCTTAGTCTGCATTTTCACAATTATCTTGTCATTCTCTCTTCCTTTCTATTTTTATGTGCCCCTTTCCACGTCCTATCATTACATTGGGTTTTGTAGCATTAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAATCAAGATTTTAACAGCAAAATTGGCTACTGGATTTGTAGGTCATAGACATAAGCTTAGTGGTTCAGTAGTGAATAGTGATGTGCCCATTATTGCATAATCAAAGAGAATTTGAGTGTTTCTAAACACGTGTTAAGGAGAGAAAGTACAGCAAACACAAGTGTGATTCAGAGTGATGCTAGAGACAGTATTTAATCATGCTGGTGTCAAAAGCAGTAAACAGACGGAGGGATTCATCCTGCATGGAAATGCCATCTCAGCAAGACTGCGCTGTTGTAATTTTTTTCTCTTTTTTTCACCGTTGTTTTTTTTTTATGTGTTTCTCTCTGTGAAGGAGGTGGAGTGGTGAAGGCGAAGAGAAAACAAGACAAAGCCAGGAAAAGAGACCTGTAAGAAATCTCTGGAGTCCTGATTATAAAGAGCTCACAGACAATCCTGTTACTACTGAAGATGCATCTGCCAACTCACACATGCTACAAAACCACCTCACAAGAGTTCTTCCCATAATACACCTCGTAACTAGTTTTTTGAGTCACTGTCTAATGTTTTTTTAACCTTACTGTGAAGGCATCAGTTGATGCTCCATGTTTTGAACCATTCATAAGGGTCTCTGAGACCCCAAACGTTAGTAATGTACAGCGTCATTTTCATGGGGGACATTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313232 lncRNA downstream 2109 5190068 ~ 5191527 (-) True G276110
TU313355 lncRNA downstream 6046 5187373 ~ 5187590 (-) True G276222
TU313353 lncRNA downstream 8042 5185326 ~ 5185594 (-) True G276220
TU313347 lncRNA downstream 16290 5176967 ~ 5177346 (-) True G276214
TU313346 lncRNA downstream 16702 5176281 ~ 5176934 (-) True G276213
TU313222 lncRNA upstream 119146 5314674 ~ 5315903 (-) True G276100
CI01000069_05100248_05121420.mRNA mRNA downstream 72216 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
CI01000069_05042346_05044105.mRNA mRNA downstream 148401 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
CI01000069_05025745_05032197.mRNA mRNA downstream 161439 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_04996783_05001227.mRNA mRNA downstream 192409 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_04985959_04986408.mRNA mRNA downstream 207228 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_05227862_05278522.mRNA mRNA upstream 32334 5227862 ~ 5278522 (-) True CI01000069_05227862_05278522
CI01000069_05321785_05324036.mRNA mRNA upstream 125743 5321271 ~ 5324097 (-) True CI01000069_05321785_05324036
TU313215 other downstream 207212 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408
TU313201 other downstream 251437 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1386559 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1424416 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1617301 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352

Expression Profile