RNA id: CI01000071_00807216_00807677.mRNA



Basic Information


Item Value
RNA id CI01000071_00807216_00807677.mRNA
length 1060
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000071_00807216_00807677
representative False

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 806831 ~ 808142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAAATATGCTGTATGAAAATAGACAGCAGAGTAATATGAGAGACATAGTAGTACCAGCATGTTGCAACATGGAAAGGTCAAATATCTTGTAATTATATACAAATACTGACCAAACAAAATCAAAAATTGCAGAGTGACCTGCATTTTGTGCAAAAAAAAAAAAAAAAAAAAAAATTGGATGGCAATTTTATTTATTTATTTTTTTTTAAATGCCCCAATAACACATATTATGGACAAATTATTTAATGCATAATCGTAGTTGAAACCAAAGGGCCTTCACCTGGATGTTGATGTTGGTTTAACCCGACGGCATTAGGACCTTCCAGAAGCGCCGTCGATCTGCGTGGATTGGGTTGCATCCATCTCACTGTTCTGCGACAATGTCAGCGCGCCTGATCTCTCTCATCGCTTGCTGCATAACGTTTTTCCAATATGGAAATGCACAACTGGGAGAGTCTAAAGTAAATGACAGACCTTATGAAGTCCTGCTGAGGCAAAATTTGGTTCTTCTTTTAAGTGTTCTGTCCACACTGTTGGTGATCATGATTGGGATGGCAGTTTGTGTCTACAAACCTCTTCGACGCAGGTGACGAGCCCTGTGGATGAAAGTCGCCGGGAACTGAACACTACTATGGCGAAGGCTTGCTTCTGAATATTAATAAGCCAATACATAGCCATTGGACAAGAACAGCGCAACGTCAGCACGAACTACTTAATAGTCGGGATCCAACACTTCGCTAATGGAAGGTTACAAATTAACGTCAGTATGACCAAATTAATATTAAACACTCCATGTCAGTGGAATCGAGGCTAAATATCCATGAGGATCGTTTAAGACAAAACCTTATAATTTACGTTGTTAAAATTGAACACTATTTTAAACATACATACTACAGCATGTCTTTTTCTTAATGTGGACAGTGTAAGCTGCTAAATTGTTTACTGTCTGAATTTATATATATTTATTTTTTATTTAATTTTATTTTGATGTATTTATTGCAAGATGTTTATTTAACAGGTTTTGGCATGTCAGACCTCTTGAACAGGCCTACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU317923 lncRNA upstream 30720 737965 ~ 776111 (+) True G280413
TU317921 lncRNA upstream 79461 726653 ~ 727370 (+) True G280411
TU317825 lncRNA upstream 85789 715207 ~ 721042 (+) False G280336
TU317986 lncRNA downstream 90676 898818 ~ 899610 (+) True G280449
TU318014 lncRNA downstream 94725 902867 ~ 903174 (+) True G280477
TU318015 lncRNA downstream 95641 903783 ~ 904013 (+) True G280478
TU318016 lncRNA downstream 96490 904632 ~ 904864 (+) True G280479
TU318043 lncRNA downstream 133253 941395 ~ 943005 (+) True G280505
CI01000071_00792254_00802384.mRNA mRNA upstream 3702 791346 ~ 803129 (+) False CI01000071_00792254_00802384
CI01000071_00707882_00708320.mRNA mRNA upstream 97556 706888 ~ 709275 (+) False CI01000071_00707882_00708320
CI01000071_00544529_00545575.mRNA mRNA upstream 260990 544249 ~ 545841 (+) True CI01000071_00544529_00545575
CI01000071_00531716_00534432.mRNA mRNA upstream 271869 530382 ~ 534962 (+) True CI01000071_00531716_00534432
CI01000071_00335696_00339048.mRNA mRNA upstream 467258 335049 ~ 339573 (+) True CI01000071_00335696_00339048
CI01000071_00825247_00853236.mRNA mRNA downstream 16797 824939 ~ 853754 (+) True CI01000071_00825247_00853236
CI01000071_00867024_00871868.mRNA mRNA downstream 58699 866841 ~ 873319 (+) True CI01000071_00867024_00871868
CI01000071_00880705_00897817.mRNA mRNA downstream 72563 880705 ~ 898445 (+) True CI01000071_00880705_00897817
CI01000071_00923006_00927912.mRNA mRNA downstream 114610 922752 ~ 928488 (+) True CI01000071_00923006_00927912
CI01000071_00965582_00968758.mRNA mRNA downstream 156859 965001 ~ 969361 (+) True CI01000071_00965582_00968758
TU318001 other upstream 3514 799775 ~ 799876 (+) True G280464
TU317961 other downstream 97075 905217 ~ 922096 (+) True G280443
TU318234 other downstream 566441 1375724 ~ 1375792 (+) True G280680
TU319630 other downstream 1996502 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 2247942 3056084 ~ 3056531 (+) True G282080

Expression Profile