RNA id: CI01000071_00965582_00968758.mRNA



Basic Information


Item Value
RNA id CI01000071_00965582_00968758.mRNA
length 1838
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000071_00965582_00968758
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 965001 ~ 969361 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATATATGCAGGTCTTAAAAAACAAAGGTCCATACCAAAGTTATAAAGTTTGGGGTCGGAAGATGTATTTGAAAGAGGTCTCATACTCACTAAAACTGCATTTATTTGATCAAAAATACAGTAAAAACAGTAAGATGAGACTAAAGGTCACCTGTGACCTTTCCACTGTGATTACGTAATGCGTGGCGCATCGCAGAGCTAGTGCAAGACGAGCATTTGTGGTTAAAAAGTTTTGTTTTTTTTTTGTTTTTTTTAAATGACAGATTTTTCGCTAGATAAGACCCTTATTTCTCGGCTGGGATCATGTAGAGCCCTTTGAAGCGCAACTGAAACTGCAATTTGGACCTTCAACCCGTTGGTAACTGTTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTCCCTCAAAATCCTTAATTTCTTTCGACTGAAGAAAGAAAGAAACATCTTGGATGACATAGGGGTCAGTAAATCATCAGGAAATTTTAATTATGAAGTGAACTTATCCTTTAAATCATTTATTAAAAACCAAATAGGGCCCATTTTGATTTAATGTAAACGGAAGTATTATGTTTTAAATGGGCAGCACAGTTTGTCCACAATCCAAACACAAATACAGACCTCAGTGTCCTAAAAGGACAGTTTATGGAGATTTCAGCTGCACAGACAGATCCAGAGCTTCTCCAGTGTCTCGCAGGAAGAATGATGTCAACTGTGCAACTATCTCAGATGTCCCCTTTGAAAGCCCTGTTCCAGACTTTCTCTCTCTCAATAGAGGGAATCTGAAAAGGGCTGAGATGAGAGATAGATGTGCTCAGAGCCTGGGTGTCTGGCCCTCGTATAAAACACACAGCCAAAATATCCAGAGAGGGCACCGTTTGTACGAGGGACAAGGTGACCCTGTCTCCCGGGAGCCTCAAAAACATGTTTTTCTGGAAAGGAAATTCAATGGAGCTTCATCCCTGAGCGATCCTTGGGAGAAACCCCTATCGAGTAGCAACACTCTGTGCATCACTGAGCCCAGCCAACCCTGTCTGGAGCTTTCAGCCCGCTGGATCGAGTTTCCTCAGATTAGATTTCTAATATTGTGCGCGTTCAGAAAGCTTCGGTTTCTCCTTAACAAAGAGAACGAGCCCGTTATGTTCCCCCCGTTCGCTCTTTTTCAGAGTGGTCTCCACAGCGCGCTCTCAGATTCCAGAACACAATGCTGCTCAGGTCTGGCTCGGATTTAAAAGATTAATAGCCCTCTGTCGTGACAGAAATGCAATCGTCTGAGTTTTCTGTGACAGCAGGGAGGGGGACGTGCAAAAAACGACGAGTGTGAAAACCGAAAGAGAGAAACTATTGTCCACGGTCACAAACGCAGCTGATGAGGACTGATTGCTATCGCTACTCTCTCAAGTTTGCCTGTCAATCAAAGCCGGCAACATCAATGGGACGAATTTGAATGATAAAACGAAAAGTCACAAGCGGCAGCATTTCGCTTGTCACCGGGGTTAGCGAACGTGTCGACGTGAAGAGGAGGGGAGGGGAGAAGTTTGCACAGAAATCGGGTTTTGGCGAGAAGATGCCGTCTCTGCCCTTCAATCATAACACAAAGCATTACCACCGAGCGTCTGCTTAACAATCCCCGATTCAATACCCAGCACAAGTCTGTCACTCGCACGCGCAAGAGAGAACAGAATGGGCCTGGCGCTGCAAGACACGTCGTAAGTGACACTCAATGGGAGAGTTTCATGGCTTGTCTCTGCTCCATCAGTGCGGATCAATCAAGCATTCCCCAATAACCAGCAGCTGTCACCTCGCAGGAAACATCAATCAGATGTCGTTCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU318043 lncRNA upstream 21996 941395 ~ 943005 (+) True G280505
TU318016 lncRNA upstream 60137 904632 ~ 904864 (+) True G280479
TU318015 lncRNA upstream 60988 903783 ~ 904013 (+) True G280478
TU318014 lncRNA upstream 61827 902867 ~ 903174 (+) True G280477
TU317986 lncRNA upstream 65391 898818 ~ 899610 (+) True G280449
TU318078 lncRNA downstream 41171 1010532 ~ 1010771 (+) True G280537
TU318101 lncRNA downstream 85437 1054798 ~ 1055116 (+) True G280558
TU318103 lncRNA downstream 89628 1058989 ~ 1059265 (+) True G280560
TU318104 lncRNA downstream 90320 1059681 ~ 1059906 (+) True G280561
TU318106 lncRNA downstream 96095 1065456 ~ 1065967 (+) True G280563
CI01000071_00923006_00927912.mRNA mRNA upstream 36513 922752 ~ 928488 (+) True CI01000071_00923006_00927912
CI01000071_00880705_00897817.mRNA mRNA upstream 66556 880705 ~ 898445 (+) True CI01000071_00880705_00897817
CI01000071_00867024_00871868.mRNA mRNA upstream 91682 866841 ~ 873319 (+) True CI01000071_00867024_00871868
CI01000071_00825247_00853236.mRNA mRNA upstream 111247 824939 ~ 853754 (+) True CI01000071_00825247_00853236
CI01000071_00807216_00807677.mRNA mRNA upstream 156859 806831 ~ 808142 (+) False CI01000071_00807216_00807677
CI01000071_00971517_00971823.mRNA mRNA downstream 1676 971037 ~ 972217 (+) True CI01000071_00971517_00971823
CI01000071_01086147_01088260.mRNA mRNA downstream 116786 1086147 ~ 1088399 (+) True CI01000071_01086147_01088260
CI01000071_01113148_01115596.mRNA mRNA downstream 143787 1113148 ~ 1116722 (+) True CI01000071_01113148_01115596
CI01000071_01139373_01146663.mRNA mRNA downstream 169703 1139064 ~ 1146678 (+) True CI01000071_01139373_01146663
CI01000071_01374449_01376813.mRNA mRNA downstream 404635 1373996 ~ 1376855 (+) False CI01000071_01374449_01376813
TU317961 other upstream 42905 905217 ~ 922096 (+) True G280443
TU318001 other upstream 161684 799775 ~ 799876 (+) True G280464
TU318234 other downstream 405222 1375724 ~ 1375792 (+) True G280680
TU319630 other downstream 1835283 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 2086723 3056084 ~ 3056531 (+) True G282080

Expression Profile