RNA id: TU318244


Basic Information

Item Value
RNA id TU318244
length 232
lncRNA type sense_over
GC content 0.34
exon number 1
gene id CI01000071_01380924_01388813
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1380558 ~ 1388948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCATGCTTTAATTTCCCAAGTTAGTATTTGACCATTTTAATTTCTTCCTAAAGTGTGTATTGATTTAAAAATATCAACATAGGCACGTTTTAAGGCACTTTCCTATAAGTGAAACAAATCTTACAGTGAGCCTTAGCTGTCAACATTCTTCTGTATTATTCACACAACAGAGTCGGTTCAGTGACAGATAATTTATCCCAACTAGTTGCCACATAGCCTAATGAATCTGAC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15306 RANBP1; Ran-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318230 lncRNA upstream 9693 1357275 ~ 1370979 (+) True G280676
TU318208 lncRNA upstream 74530 1305898 ~ 1306142 (+) True G280662
TU318192 lncRNA upstream 98249 1280535 ~ 1282423 (+) True G280646
TU318172 lncRNA upstream 137152 1243296 ~ 1243520 (+) True G280628
TU318158 lncRNA upstream 173098 1207275 ~ 1207574 (+) True G280614
TU318249 lncRNA downstream 85345 1466248 ~ 1517469 (+) True G280695
TU318261 lncRNA downstream 115460 1496363 ~ 1496634 (+) True G280705
TU318274 lncRNA downstream 141088 1521991 ~ 1528807 (+) True CI01000071_01514470_01525572
TU318300 lncRNA downstream 350228 1731131 ~ 1731351 (+) True G280740
TU318308 lncRNA downstream 359988 1740891 ~ 1742345 (+) True G280745
CI01000071_01374449_01376813.mRNA mRNA upstream 3817 1373996 ~ 1376855 (+) False CI01000071_01374449_01376813
CI01000071_01139373_01146663.mRNA mRNA upstream 233994 1139064 ~ 1146678 (+) True CI01000071_01139373_01146663
CI01000071_01113148_01115596.mRNA mRNA upstream 263950 1113148 ~ 1116722 (+) True CI01000071_01113148_01115596
CI01000071_01086147_01088260.mRNA mRNA upstream 292273 1086147 ~ 1088399 (+) True CI01000071_01086147_01088260
CI01000071_00971517_00971823.mRNA mRNA upstream 408455 971037 ~ 972217 (+) True CI01000071_00971517_00971823
CI01000071_01392755_01411463.mRNA mRNA downstream 11852 1392755 ~ 1412681 (+) True CI01000071_01392755_01411463
CI01000071_01416847_01427453.mRNA mRNA downstream 35511 1416414 ~ 1428798 (+) True CI01000071_01416847_01427453
CI01000071_01436960_01442221.mRNA mRNA downstream 56057 1436960 ~ 1442520 (+) True CI01000071_01436960_01442221
CI01000071_01443137_01445109.mRNA mRNA downstream 62234 1443137 ~ 1445166 (+) True CI01000071_01443137_01445109
CI01000071_01452292_01490229.mRNA mRNA downstream 69661 1450564 ~ 1490912 (+) True CI01000071_01452292_01490229
TU318234 other upstream 3002 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 458576 905217 ~ 922096 (+) True G280443
TU318001 other upstream 577355 799775 ~ 799876 (+) True G280464
TU319630 other downstream 1423741 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 1675181 3056084 ~ 3056531 (+) True G282080