RNA id: CI01000071_02137176_02137478.mRNA



Basic Information


Item Value
RNA id CI01000071_02137176_02137478.mRNA
length 1904
RNA type mRNA
GC content 0.42
exon number 1
gene id CI01000071_02137176_02137478
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 2136006 ~ 2137909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAATTCAGGTGGTTAGTAAAGGAAAATCCATAGCCTTGGGTAAATAATAAAGCACCACAGCTGCCCATGTAGATGTTCACCAAAACTGTCTCCTGTGACATGCGTTCAATTTACTTGCAATCATAAGAGAAGACCTCCAAAACACAAACTTATCAAACCTACAGGGGTTCACACCTGAGCTGAATGTATTTATCGCAGATATCTTGGATTCATGGGGAAAAATAACATTTAAGGTGTCCAGTCCAACAAGGAACATGCATGTATGAATAGAAAGGAGCTCATGTAAACATGAGGGTTGTGCACCATTCAGAATTGATTTGAGATTTCCTTTTAAAGTCCAATTAAATTCCTGAATTGAGTTTAAAAAACAGGATACACAATTTCAATTCAAATTTGAATGTTATTACGTAGAATTAAAAAGGGCTGAAATTCAAAAGAAATACATATGACTGTCATTTTTAACGAAACAATTTTAATTAATGCATTTCATTATAATACATAAAAAAAAAAAAAGACTTTTGTAGACCTGGGTGGGAGGACACTTAATTTTCCAGAATGCATTGCTTGTGTTAAATGTATTTAAATTCTTCTTCCTGTCATTCCAATTCAAATTCCAATTCAATTTCCTGACGGCAGAAGGTCTGGACTCTTTCGCAGCTTTCACTGGCCAAGGACCACCCAAGACGACGTTTGACTGACATGTAACGCAACCAATCAGTTTGTTTTGTTCTGCGTCATGGTTAGGGGTGTGAAAATGTAAAGTTGATGTCCCTACAATAACAGATCGGCGTGCATCTAATAAATTATTAATTCAAGAACGTTGTGTAAGTTTACTTTAACAATGGAGCTGTGAACTTCACATACTTTTGAAAATCCAGCGTTTAGTTGATCCTGATAAGTGCTCACTGTCACAGCTGTAAACATGACAGCTTCTTCTTCCACGAGGGGGTTTGGCATCACGGCATTTGTTTCTAGGTGGACCGTTAAAGAACGCGACACACACGTCTCCCAGACATCCTATAGAATTCAACCAACCAGATGATGACTTTGAAAATCCTGAAGTGTTTCCAGTTAAGTGTTCCATATGCATCAGATGTGTCAGTGACGTCTAAGGCTGGGACTGTGTGGGTTAAACTTCAACTTTAAGATGACATCACAAAATTCACATGAACTCCACTGGCTGTAGCGCACAAAAAGCAGGACTTGTTTGGTACCTGCTCATCTTTTCCACATCTATTGCCATTGTGGCCCTCCATGCCCCCTCACACCTAGGAAAGGCAGCAAGGTCTACCTCTAAATGGCTCTTCATAGTCGAGATCCACTCCTGGGATCCTCTTATCCGGTCTCTCCCCAGCGAGGCAACACATCAGCGGGGTTCAGCGTCCCACTCTTTCGCTGCTCTCCAGCGCGGTGCTAAAATAACAGCCACTCTGGGTCTGAATGGGGCCACTGGAGAGGAAGGCTGTTAAGAGGCCTATCCTGTGCTCGGCACAAGGGGGAACAGATGCCTGTTTGATTAATAGAAGACCACACAGACTGGGATTTCAAAAATTTTTTCTTTCCTTCCCTTTTCAGCGACGAGAGCCTCACACAGTGGTATTTGCGCCTTAGCGTAGCTCGAAACGATTAATGACCGTCTGAACATAAAATACGAGATCTCTGCGCAATGTCTCTCGCTGAAGAGCGTCCCTCTGCGGTTTTCTACCATGTGCTGATTTCAGGGCTAATTAGCTTAACCTCACAAACCGTCTCTGAGCTGCAAGACTTCAGCGTGATGAATGCAGATGGAAAAACGCATCTGCGGAGTAACTTAAACGCACAGAAGCATGTGTTTGTACTTGCCATGGCGGTGTGACTTATATCTTGAACACTGAATATGTATAGCATTGATAAAGAGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU319082 lncRNA upstream 37039 2098741 ~ 2098967 (+) True G281451
TU319043 lncRNA upstream 59820 2075730 ~ 2076186 (+) True G281412
TU319036 lncRNA upstream 83623 2050155 ~ 2052383 (+) True G281406
TU319055 lncRNA upstream 128447 2006009 ~ 2007559 (+) True G281424
TU319045 lncRNA upstream 133942 1993072 ~ 2002064 (+) True CI01000071_02000540_02048898
TU319111 lncRNA downstream 13083 2150992 ~ 2151588 (+) True G281480
TU319148 lncRNA downstream 66912 2204821 ~ 2207349 (+) True G281517
TU319330 lncRNA downstream 274705 2412614 ~ 2414898 (+) True G281691
TU319375 lncRNA downstream 372923 2510832 ~ 2511149 (+) True G281736
TU319376 lncRNA downstream 373707 2511616 ~ 2511884 (+) True G281737
CI01000071_02105220_02105800.mRNA mRNA upstream 29984 2105220 ~ 2106022 (+) True CI01000071_02105220_02105800
CI01000071_02063411_02065517.mRNA mRNA upstream 70441 2063411 ~ 2065565 (+) True CI01000071_02063411_02065517
CI01000071_02000540_02048898.mRNA mRNA upstream 86423 2000385 ~ 2049583 (+) False CI01000071_02000540_02048898
CI01000071_01966426_01969786.mRNA mRNA upstream 166220 1966093 ~ 1969786 (+) True CI01000071_01966426_01969786
CI01000071_01909999_01929819.mRNA mRNA upstream 205745 1909078 ~ 1930261 (+) True CI01000071_01909999_01929819
CI01000071_02329452_02331682.mRNA mRNA downstream 191323 2329232 ~ 2332031 (+) True CI01000071_02329452_02331682
CI01000071_02417387_02420895.mRNA mRNA downstream 278121 2416030 ~ 2421297 (+) True CI01000071_02417387_02420895
CI01000071_02539510_02615505.mRNA mRNA downstream 401274 2539183 ~ 2616293 (+) True CI01000071_02539510_02615505
CI01000071_02656286_02658917.mRNA mRNA downstream 518377 2656286 ~ 2659097 (+) True CI01000071_02656286_02658917
CI01000071_02770135_02797577.mRNA mRNA downstream 631328 2769237 ~ 2797773 (+) True CI01000071_02770135_02797577
TU318234 other upstream 758336 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 1213910 905217 ~ 922096 (+) True G280443
TU318001 other upstream 1332689 799775 ~ 799876 (+) True G280464
TU319630 other downstream 666735 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 918175 3056084 ~ 3056531 (+) True G282080

Expression Profile