RNA id: CI01000071_02417387_02420895.mRNA



Basic Information


Item Value
RNA id CI01000071_02417387_02420895.mRNA
length 2506
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000071_02417387_02420895
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 2416030 ~ 2421297 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAAAAGAAAACACTCTATTGCTTAATGAGCCACTTATGACTCTTCTCAATTTCTACCCCATTATTTTTATTGCAATTTTCAGAGGAGCACTAATGCTAGTCTGTCGTTTCTGTCTTCCCTGAACAGCTTTCTCAGCCAGCGGGTGCTTCATGGAGAAAAGAAAAAGAAAAAAAAAAAAACTAAATTGCTGGAAAATAGTACAAGTGGAAAATAAGGTGAATCAAACTCGGCCTTGAAAATGTTTATTGCTTACTGCTTACAGTCTTTCACAGAACATTGTGTTGACTAACGTGAAAGTCAAACAAATACTAATGACACACTACATGACCTCGATTAAATCTTTTAAACAGCATCTTAGATCACAGATTTCATTAACATGCACTTTTCTCCACCTCTTCATCTCCCACACTCACTCTCTCAAAGAGACAAACATGATAATCACTCAAAAATCACTGTCCAACACCCAACTACATCTTTCCACCCTCCTGTCTGAGACTTAATATATTTAGAACAATTATCAATAGCTTATAGGATCCTTTAGAGCAGCTAATGTGCAAGTGTGGACACCAGATGGTGGAGCTATTTTCTTTTATATTTCAAATTGAAAGATAAGTAGGCAATACGAAAACATCATGCTATCTAACATACGAACAAAAGTTCTTTATCATTCTCATTCCCTTAAAGAACTAAAATCACCATGGAGAGATGTCACATTCCAGTGCAACGCTAAAGGCACTTCGCAAAAATTCCTGAGCTTCCACTATGACATCATCAGCCTTGCCTTTGTTTTAACTATTAATTGTTTTTGTTTTTTATCTTTTCATCCTATAGTGAAGTCAAACCAATGGGTAAAACTAATAGTTCCAATGAGAACAAGCAGAGATCCGATCACTAAGCGGAAATGCAAATGAAATGCTTCAGGTTTACATAACAAAATTCCAACTTGTAACATTAAACCCAGAGAAATATATAACCATAAGGATCAACTGGATCCGAAAAGAGGATTTACATCCTGTATCCAGCACAACCACACACTCACACAATCCTCTTCATTCTCATGAGGGGGAAATAACTGCAGCATTCTTATCAATTAAGTACTTCATTACACAGGAGGACTTAAAGAGATGGGAGGCATTATGTAATTTTGCTAAAACACATCTCAAAGCTTCATATCCCACAGCTGACATTTAAATCATCCCTGAAAATTCATACACACACACACACACACACACACACAGGTAAGCAGATTCAGAAGCAAATCATTAAGTAGTAAACAAATGCATCTGGTGGATTTCTTTTCCTTTGCCAGATGGAGAGCTCTAGCCACTTAACTGTTCATCAGACATGCAAAACATGAGGAAAAGTTCAAAGAAAGAAGCATTTATCTGCAGTGGCCTGAATTACACTGCATACTCTCGTCTCTTCCTCCGGGGGGGTCGCGGGGTTCTGCTCGAGGATGTCGAGCGTGGCGGAGCGTTTTTACCGGGACTTCGCTCCCGTTCGGAACCAGACGAGGGGCTTCGATTGCGGGCTTCCCCGACGCGTGCCTCCCGTTTCCGTCCCCTCTCGCGCTGCGAACGGGATCTGCGACTCTGCTTCACTTTCCCTTCCATTTTAAAAACGGAACTTATTGTATCGCCAAGTTTCAGCGTGAAGAGACGCCACGAAACCATCCGAGACAGCACGGTCCGCGTCAAGCTGAAAACGCTCTTATATCCCCCAAAGATCCTTCTTCAGCACACAACCCAGCAAAAACAAATCATATCCAACCAGGAAAAGAGTTCGTTATCCAGCAGAGAAAATCGCACTGCGAAGTGTAAATGCTCGGAGTCTAGCAAACTGACGTACTTCCGCCACTTCTGCGATTGCCAGAGGAAGGTGTTTGTCGTCTGTGAGAGACGCGCAGTTAGCGAGCTGTCAGCGGCCAAATGCGCATCAGTGCAGGGCAGGCAGCTTCAAAAGCCCACACAGATCTCAGTAGCCCAAACCCTCTCCCCCATTAGAGCACACAGTGAGAGCTTGTGCATCATCTGCCTCAAATGGTCTGTCTACTGCTGTAGTCTGATAACCTTCAACCTAGGCATTAAAAGGAAATTATAAAATAAATCTGTCACCTCATTTGAGGCTCAGAGTATATCTATCTATCTATCTATCTATCTATATCACATTTGCTTTAGTGTTTGCACAACAGACTTAAACTTTGTGCAATCATGTAATTAAACTATTTTAAAACCAGTAAGTTCTGATTAACTGTGAGTCTGTACACAACTCATTCATCACATTGACAAGCCCAGTTTAGATTTGTGGACACAAAGCTCAAGGGAGGAAACTCATGAGATACTTCAAGCCACACTCACCACACACAGTCCTCAGGGAAGGCATTACTATAACAGCAGGAGTTAACGGTGGTCTTTGGACTCACTAAAGTGCCCACAATTACACATCAATGATTTATTCAGGGGAATACCATTATTTTCGGCTCAATTGTTGTATATGAATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU319330 lncRNA upstream 1132 2412614 ~ 2414898 (+) True G281691
TU319148 lncRNA upstream 208681 2204821 ~ 2207349 (+) True G281517
TU319111 lncRNA upstream 264442 2150992 ~ 2151588 (+) True G281480
TU319082 lncRNA upstream 317063 2098741 ~ 2098967 (+) True G281451
TU319043 lncRNA upstream 339844 2075730 ~ 2076186 (+) True G281412
TU319375 lncRNA downstream 89535 2510832 ~ 2511149 (+) True G281736
TU319376 lncRNA downstream 90319 2511616 ~ 2511884 (+) True G281737
TU319379 lncRNA downstream 95767 2517064 ~ 2517270 (+) True G281740
TU319381 lncRNA downstream 97926 2519223 ~ 2519551 (+) True G281742
TU319610 lncRNA downstream 245361 2666658 ~ 2666880 (+) True G281954
CI01000071_02329452_02331682.mRNA mRNA upstream 83999 2329232 ~ 2332031 (+) True CI01000071_02329452_02331682
CI01000071_02137176_02137478.mRNA mRNA upstream 278121 2136006 ~ 2137909 (+) True CI01000071_02137176_02137478
CI01000071_02105220_02105800.mRNA mRNA upstream 310008 2105220 ~ 2106022 (+) True CI01000071_02105220_02105800
CI01000071_02063411_02065517.mRNA mRNA upstream 350465 2063411 ~ 2065565 (+) True CI01000071_02063411_02065517
CI01000071_02000540_02048898.mRNA mRNA upstream 366447 2000385 ~ 2049583 (+) False CI01000071_02000540_02048898
CI01000071_02539510_02615505.mRNA mRNA downstream 117886 2539183 ~ 2616293 (+) True CI01000071_02539510_02615505
CI01000071_02656286_02658917.mRNA mRNA downstream 234989 2656286 ~ 2659097 (+) True CI01000071_02656286_02658917
CI01000071_02770135_02797577.mRNA mRNA downstream 347940 2769237 ~ 2797773 (+) True CI01000071_02770135_02797577
CI01000071_02815324_02834097.mRNA mRNA downstream 393830 2815127 ~ 2834699 (+) False CI01000071_02815324_02834097
CI01000071_02838185_02847470.mRNA mRNA downstream 416851 2838148 ~ 2847611 (+) True CI01000071_02838185_02847470
TU318234 other upstream 1038360 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 1493934 905217 ~ 922096 (+) True G280443
TU318001 other upstream 1612713 799775 ~ 799876 (+) True G280464
TU319630 other downstream 383347 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 634787 3056084 ~ 3056531 (+) True G282080

Expression Profile