RNA id: CI01000071_02539510_02615505.mRNA


Basic Information

Item Value
RNA id CI01000071_02539510_02615505.mRNA
length 3074
RNA type mRNA
GC content 0.45
exon number 14
gene id CI01000071_02539510_02615505
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 2539183 ~ 2616293 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATAAATTGGTGTTCAGATTGTCTAGATGTCCTCACAGCATGGTCCAATTGGTTTTCAGCTTGTTTAGTTGGTTGGCCAGCACTTGACCAGTGACCAAAACCTTCTAAACCAACGAACCATCTTAGACTGTTTTAAACTGTAGAGAGATACAGTATGTAAGTAAAAGCATTGTTGTACTATAACATACATGCAGTTTGAAAAAATTGTGTCCATGAAAATGATATTATCACCTCAACGTTTTGCATTGTATTAGCAGGCATTAAGTCATTGTGATTTGCAGTTTCTCTCTGCCATAGACAGCTGGCTCTCAGGGATTAGTGTCAAAATGCCAGGCCTCTATCTAATAGAATTCTCTAAAACAGCCAACAGAGGCAGCCTTCGAGACAATGGCAAAACAATGACAGTGAAAGAGACACAAAACCTCAGACGGCTACAGAGAGACATTACCATTTCAGCTCCAGCTTGCAAGAACATCTATGATGCAAGAACTCAACCTCCAAGACAAATCAACACTCTGGGAGGTCTAGCCAAGCCCATGGGTCTGGTGGAGGGTCCTGGAGGTCTAGGACAGGGCGGTGCAGCTGCCACGCTGGGGGAGGACAGCCGAGAGAGCGAAGGGAGGTATGAGGAGTATGGCTACAATGCCCAACTGAGTGACCGCATCTCTTTGGACAGGAACATTCCGGACTACAGGCCGAAAAACCTTTATTTAGAAGATGAGATGAAAAGGGTGTTGAGATCTATCAACATTCCTTCTTATTCTACTGATGAGAAGTTATCAGTGAAAACATGGTGCGGTGACAAGGCAAATTATGTTTTTTTTAGCAGAGGTCAAATTATGATAACTGGACAGCCAGCTTTGGCTCTATTTCACACGGATGAGTCCATCTCTCATCCTGTTACAGCCCGCAGCTGCCTGCCCCTGTCCAGCGGTACAAATTCAGACTTGAGCAATGGCCTAGATTGCAGGGCTGAGCCTATCCTCACCAGAGTGAAAGAAGATCACACCAGGATAATCCTCCCTGCGATAGATAATATCAAGTACAACACCTTTGAGGTGCAGCAATACGCTAATGCAGCTCATGGCTACAACTGGGGCCTCTGGTGCATGTACATCATCCCGCCGCAGGATTGGCTGGACAAAGGAGATGAGACTGCCCCCATCAGGACACCTGCAATGATTGGCTGCTCCTTTGTTGTGGATCGTGAGTATTTTGGAGAAATCGGACTGCTTGACCCAGGAATGGAGGTCTATGGAGGAGAGAACATTGAGCTTGGTATGAGGCTTGCCGCTCTTAGCTGGGGTGGCCTGAGTACTCTAGCAGCTGGCGCCGGGGGGAAGAGACTACAGCTTATCAAACACATATTAAAGGAAAAGAGCAAATGTCAAGAACGTCAGAATTTAGAGCTTTTATTGAGCTTGAACAAAGCATACAATGGAGTATTCACTGTAGAGAGAGAGGAAAAAGGTAGACCTACAGCATGTGTCGTCTGGCGGTTGCACTATGGATCAGTGGTGCTGAAGTTGAAAGTATTTTCACAGCTAATGAAAGTCAGTGAATGCATAGCTAGTTCCATTAATGTCACGGTGTGGCAGTGTGGCGGCAGTATGGAGGTTCTTCCATGTGCCAGAGTAGCGCATATTGAACGTACAAAGAAACCGTACAACAATGACATCGACTACTATGCCAAGCGAAACGCACTGCGGGCAGCAGAGGTCTGGATGGATGAGTTCAAGTCCCACGTCTACATGGCTTGGAATATCCCCATGAATAACCCAGGAGTGGATTTTGGAGACGTGTCAGAGCGTGTAGCGCTGAGGAAGAAAATGAACTGCAGGAGCTTTCGCTGGTACCTCGAGCATGTCTATCCCGAGATGAGAATTTATAATAACACCATCACTTATGGAGAGGGGTCAGAGGAGGATGACAGGGCCATACTCTATCCATGTCATGGCATGTCATCGCAGCTGGCAAGGTACACCACCGAAGGCTTATTGCAGTTAGGACCCCTGGGGTCGACTACGTTTCTGCCTGACACGAAATGCCTGGTGGATGATGGAAGAGGAAGGACTCCCAGCTTGAAAAAATGTGATGCTGTCACCCGGTCCTCCCAGAGGCTCTGGGATTTTACCCAGAATGGGCCCATCATAAGTCGAGACACAGGACGTTGTCTGGAGGTTGAAATGTCAAAAGATGCGAACTTTGGCCTGCGGCTGGTCGTCCAGCGCTGCTCAGGGCAGAAATGGATGATTCGGAACTGGATAAAACACCCCAGACACTGAGGAACATCCAACCTGAAATTAACCTCCCTGAGCTGAAGAGCAGCCATAGACACAAACCCTGAGTCTGGGGTTTAGACAGAGGAGATGAACTTACGTGCAAGATACTCTCTTTCAGGGTAAAATGCTTTCAATATAGACGTCTAAAGGTGGGATATTATTTTTAGACACATTTACTGTTGAACGAGCAGCTAAATCAGAAGACCTTCATCACAGGAGAAAGACTTGTTCATTGCAAGTCCACTGTACAGACTCCCAGCGTACTGCAGCATACTTGTGTTCCCAAGCGAAATTCTGATGAGCTGTCTTAGTGAAGTTCCGAGAGGAAAATTCTAAAGAGTTGGGGATAAACAAAGAGAGAGGAAGCAAAAGTCTTGAGTTTTACTTCTTATCAATTGCCATATCAACACTTATTTCTTCAGGCTATGAATTGCTTTGGATAATTGAATATCCACATTGAAACTTTAATCCCAAGTGCTACAAAACAAAAAAAGAAAGTAGTATAGACTTTAATCTGACACAATAGTTTCAGCTATTTTATCTATTGAGTATTTTCTTTCCTTTATTTACAGACTTATTTGCTAATGCACAACAAAAACCATGCGTTCACTCAAGAACTCATGTGCCTTTCTCCATCTTTATGCCATCAGACCAGGGAATGTTCCTCCCTAAGCATGTACAAAATGTTTGATTTTTAAATTAATTAAAATATGAATATAATGTTAAGAGGTCTTATTGTAGAAACACGTTGTAAAATACTCAAAACATGATAATCCAGGAAGATCAAAACA

Function

GO:

id name namespace
GO:0008921 lipopolysaccharide-1,6-galactosyltransferase activity molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319381 lncRNA upstream 19632 2519223 ~ 2519551 (+) True G281742
TU319379 lncRNA upstream 21913 2517064 ~ 2517270 (+) True G281740
TU319376 lncRNA upstream 27299 2511616 ~ 2511884 (+) True G281737
TU319375 lncRNA upstream 28034 2510832 ~ 2511149 (+) True G281736
TU319330 lncRNA upstream 124285 2412614 ~ 2414898 (+) True G281691
TU319610 lncRNA downstream 50365 2666658 ~ 2666880 (+) True G281954
TU319618 lncRNA downstream 80028 2696321 ~ 2696593 (+) True G281962
TU319622 lncRNA downstream 88298 2704591 ~ 2704811 (+) True G281966
TU319648 lncRNA downstream 132927 2749220 ~ 2749449 (+) True G281988
TU319649 lncRNA downstream 138925 2755218 ~ 2755477 (+) True G281989
CI01000071_02417387_02420895.mRNA mRNA upstream 117886 2416030 ~ 2421297 (+) True CI01000071_02417387_02420895
CI01000071_02329452_02331682.mRNA mRNA upstream 207152 2329232 ~ 2332031 (+) True CI01000071_02329452_02331682
CI01000071_02137176_02137478.mRNA mRNA upstream 401274 2136006 ~ 2137909 (+) True CI01000071_02137176_02137478
CI01000071_02105220_02105800.mRNA mRNA upstream 433161 2105220 ~ 2106022 (+) True CI01000071_02105220_02105800
CI01000071_02063411_02065517.mRNA mRNA upstream 473618 2063411 ~ 2065565 (+) True CI01000071_02063411_02065517
CI01000071_02656286_02658917.mRNA mRNA downstream 39993 2656286 ~ 2659097 (+) True CI01000071_02656286_02658917
CI01000071_02770135_02797577.mRNA mRNA downstream 152944 2769237 ~ 2797773 (+) True CI01000071_02770135_02797577
CI01000071_02815324_02834097.mRNA mRNA downstream 198834 2815127 ~ 2834699 (+) False CI01000071_02815324_02834097
CI01000071_02838185_02847470.mRNA mRNA downstream 221855 2838148 ~ 2847611 (+) True CI01000071_02838185_02847470
CI01000071_02927971_02953988.mRNA mRNA downstream 310356 2926649 ~ 2954167 (+) True CI01000071_02927971_02953988
TU318234 other upstream 1161513 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 1617087 905217 ~ 922096 (+) True G280443
TU318001 other upstream 1735866 799775 ~ 799876 (+) True G280464
TU319630 other downstream 188351 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 439791 3056084 ~ 3056531 (+) True G282080

Expression Profile