RNA id: TCONS_00001380


Basic Information

Item Value
RNA id TCONS_00001380
length 1032
RNA type mRNA
GC content 0.58
exon number 4
gene id XLOC_000881
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58981985 ~ 58985885 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTGAAGCCCGCAAGAGGACCAGGAGACGATTCGGCGGACACGCGCACAAGAAACAGAAGGGCGCGCGCGAGCTGGAGGTGGGCGCGCAGGGCGTGCTGATCACCTGCAATATGAACGAGCGCAAGTGCACGAGCGAAGCCTTCAGCCTCCTCAGCGAGTACGCGGACGAGCTCTACGGGCCCGAGCAGgagAGTCTCAGTGAGGATGAGGAGCAGGAGGATGAGGATGCGGAGTGTGCACTACAGAGGGAAGTGTCTCAGCTGCAGTCGTCCAGTAAGGGGCGTCAGCAGCGCTTCAGTGCGGTGGACAGCGGCGCCAACAACGTGGTGTTCATCCGCACTCATGGCGTAGACCCCGCCCAGCTGGTGCATCACATCCTGTCTGACCTCCACCTGACCCGGAAGAGGAAGTCGCGTGTGATCCTGCGCATGCTGCCAGTGAGCGCCACCTGCCGAGCGTTCCCGGAGGACATGCAGAAGCTGCTGAGTGTGTTCCTGCAGCGCTGGTTCCTTGCTCCGCGGCATGCTACCTTCCAGATCTGCTTCAAAGCCAGAAACAGCAGCCACAGCAAGAGGGAGGAAGTGATCACGtgtgtttcaggtctgGTTGGTCAGCTGAACCCGCTCAATAAGGTGGATCTGACCAATCCTGAGCTCTCCATCATCATCGAGATCATCAAGAGCGTCTGCTGCGTCAGCGTCGTCACCGACTACATGCTCTTCCGCAAGTACAACCTGCAGGAGGTGGCCAAAGAGCCGGCCAATCAGAACACAGGCTCACAGAAAACACCCAATCAGAACACAGACCCACAGGAAACACCCAGTCAGAACACAGACCCGCAGGAAACACCCAATCAGAACACAGACTCCAAAgaagcagccaatcagaacacagacCCACAGAAAACAGCCAATGAGAGCAAAGGTTCACAAGAATCAGCCAATCAGACGCAGGAGCACGGGAATGGAGAGCTGCAGAGTTCTGATGTTACCGTTGGCAACGGGGCAGAGGAGGCGGAGCCTGAGTGA

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005575 cellular_component cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-1805 Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Is expressed in female organism. Orthologous to human THUMPD1 (THUMP domain containing 1).

Ensembl:

ensembl_id ENSDART00000171055

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003275 lncRNA upstream 5413 58975017 ~ 58976687 (+) True XLOC_000879
TCONS_00003274 lncRNA upstream 22643 58956066 ~ 58959457 (+) True XLOC_000878
TCONS_00003271 lncRNA upstream 127723 58853364 ~ 58854377 (+) False XLOC_000876
TCONS_00003276 lncRNA downstream 79832 59065503 ~ 59065951 (+) True XLOC_000884
TCONS_00003277 lncRNA downstream 152212 59137883 ~ 59138594 (+) True XLOC_000889
TCONS_00001398 lncRNA downstream 161714 59147385 ~ 59150521 (+) False XLOC_000891
TCONS_00001399 lncRNA downstream 163071 59148742 ~ 59150521 (+) True XLOC_000891
TCONS_00003278 lncRNA downstream 176294 59161965 ~ 59162831 (+) True XLOC_000893
TCONS_00001378 mRNA upstream 2649 58977262 ~ 58979451 (+) True XLOC_000880
TCONS_00001377 mRNA upstream 46202 58922027 ~ 58935898 (+) True XLOC_000877
TCONS_00001376 mRNA upstream 131414 58840889 ~ 58850686 (+) True XLOC_000875
TCONS_00001375 mRNA upstream 238063 58735326 ~ 58744037 (+) True XLOC_000873
TCONS_00001374 mRNA upstream 300555 58677434 ~ 58681545 (+) True XLOC_000872
TCONS_00001381 mRNA downstream 4450 58990121 ~ 59000239 (+) True XLOC_000882
TCONS_00001382 mRNA downstream 21865 59007536 ~ 59014053 (+) True XLOC_000883
TCONS_00001383 mRNA downstream 76932 59062603 ~ 59065948 (+) False XLOC_000884
TCONS_00001384 mRNA downstream 82307 59067978 ~ 59072128 (+) False XLOC_000885
TCONS_00001385 mRNA downstream 85091 59070762 ~ 59071599 (+) True XLOC_000885
TCONS_00001335 other upstream 808511 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1627067 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3684849 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 3853521 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 4795944 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001394 other downstream 145621 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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