Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU317986 |
| length | 793 |
| lncRNA type | inter_gene |
| GC content | 0.30 |
| exon number | 1 |
| gene id | G280449 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000071 |
| NCBI id | null |
| chromosome length | 5214881 |
| location | 898818 ~ 899610 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU318005 | lncRNA | upstream | 90795 | 807168 ~ 808023 (+) | True | CI01000071_00807216_00807677 |
| TU317923 | lncRNA | upstream | 122707 | 737965 ~ 776111 (+) | True | G280413 |
| TU317921 | lncRNA | upstream | 171448 | 726653 ~ 727370 (+) | True | G280411 |
| TU317825 | lncRNA | upstream | 177776 | 715207 ~ 721042 (+) | False | G280336 |
| TU318014 | lncRNA | downstream | 3257 | 902867 ~ 903174 (+) | True | G280477 |
| TU318015 | lncRNA | downstream | 4173 | 903783 ~ 904013 (+) | True | G280478 |
| TU318016 | lncRNA | downstream | 5022 | 904632 ~ 904864 (+) | True | G280479 |
| TU318043 | lncRNA | downstream | 41785 | 941395 ~ 943005 (+) | True | G280505 |
| TU318078 | lncRNA | downstream | 110922 | 1010532 ~ 1010771 (+) | True | G280537 |
| CI01000071_00880705_00897817.mRNA | mRNA | upstream | 373 | 880705 ~ 898445 (+) | True | CI01000071_00880705_00897817 |
| CI01000071_00867024_00871868.mRNA | mRNA | upstream | 25499 | 866841 ~ 873319 (+) | True | CI01000071_00867024_00871868 |
| CI01000071_00825247_00853236.mRNA | mRNA | upstream | 45064 | 824939 ~ 853754 (+) | True | CI01000071_00825247_00853236 |
| CI01000071_00807216_00807677.mRNA | mRNA | upstream | 90676 | 806831 ~ 808142 (+) | False | CI01000071_00807216_00807677 |
| CI01000071_00792254_00802384.mRNA | mRNA | upstream | 95689 | 791346 ~ 803129 (+) | False | CI01000071_00792254_00802384 |
| CI01000071_00923006_00927912.mRNA | mRNA | downstream | 23142 | 922752 ~ 928488 (+) | True | CI01000071_00923006_00927912 |
| CI01000071_00965582_00968758.mRNA | mRNA | downstream | 65391 | 965001 ~ 969361 (+) | True | CI01000071_00965582_00968758 |
| CI01000071_00971517_00971823.mRNA | mRNA | downstream | 71427 | 971037 ~ 972217 (+) | True | CI01000071_00971517_00971823 |
| CI01000071_01086147_01088260.mRNA | mRNA | downstream | 186537 | 1086147 ~ 1088399 (+) | True | CI01000071_01086147_01088260 |
| CI01000071_01113148_01115596.mRNA | mRNA | downstream | 213538 | 1113148 ~ 1116722 (+) | True | CI01000071_01113148_01115596 |
| TU318001 | other | upstream | 95501 | 799775 ~ 799876 (+) | True | G280464 |
| TU317961 | other | downstream | 5607 | 905217 ~ 922096 (+) | True | G280443 |
| TU318234 | other | downstream | 474973 | 1375724 ~ 1375792 (+) | True | G280680 |
| TU319630 | other | downstream | 1905034 | 2804644 ~ 2804806 (+) | True | G281974 |
| TU319744 | other | downstream | 2156474 | 3056084 ~ 3056531 (+) | True | G282080 |
