RNA id: TU318104



Basic Information


Item Value
RNA id TU318104
length 226
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G280561
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1059681 ~ 1059906 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATAATCTTGTTTTCCGTTTGCATTAAGATTATTTTTATTACCACACTGGCAGATACTGATAATTTTAAGTAAAATGCACTTAATTTAGATCCCCCCAGAAAACAAGACTAAATATCTTATATCATTTCCTTATATAGAAAATCCATCTTGATTTAAGAATTTTTAGATATTTGTACTTGAAATAGGACAAAAAAATACTCAAAGCATTTTTGCAGCGTGAATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU318103 lncRNA upstream 416 1058989 ~ 1059265 (+) True G280560
TU318101 lncRNA upstream 4565 1054798 ~ 1055116 (+) True G280558
TU318078 lncRNA upstream 48910 1010532 ~ 1010771 (+) True G280537
TU318043 lncRNA upstream 116676 941395 ~ 943005 (+) True G280505
TU318016 lncRNA upstream 154817 904632 ~ 904864 (+) True G280479
TU318106 lncRNA downstream 5550 1065456 ~ 1065967 (+) True G280563
TU318108 lncRNA downstream 7381 1067287 ~ 1067520 (+) True G280565
TU318111 lncRNA downstream 14955 1074861 ~ 1075309 (+) True G280568
TU318089 lncRNA downstream 29534 1089440 ~ 1089716 (+) True G280546
TU318143 lncRNA downstream 49321 1109227 ~ 1110463 (+) True G280599
CI01000071_00971517_00971823.mRNA mRNA upstream 87464 971037 ~ 972217 (+) True CI01000071_00971517_00971823
CI01000071_00965582_00968758.mRNA mRNA upstream 90320 965001 ~ 969361 (+) True CI01000071_00965582_00968758
CI01000071_00923006_00927912.mRNA mRNA upstream 131193 922752 ~ 928488 (+) True CI01000071_00923006_00927912
CI01000071_00880705_00897817.mRNA mRNA upstream 161236 880705 ~ 898445 (+) True CI01000071_00880705_00897817
CI01000071_00867024_00871868.mRNA mRNA upstream 186362 866841 ~ 873319 (+) True CI01000071_00867024_00871868
CI01000071_01086147_01088260.mRNA mRNA downstream 26241 1086147 ~ 1088399 (+) True CI01000071_01086147_01088260
CI01000071_01113148_01115596.mRNA mRNA downstream 53242 1113148 ~ 1116722 (+) True CI01000071_01113148_01115596
CI01000071_01139373_01146663.mRNA mRNA downstream 79158 1139064 ~ 1146678 (+) True CI01000071_01139373_01146663
CI01000071_01374449_01376813.mRNA mRNA downstream 314090 1373996 ~ 1376855 (+) False CI01000071_01374449_01376813
CI01000071_01380924_01388813.mRNA mRNA downstream 320652 1380558 ~ 1388948 (+) False CI01000071_01380924_01388813
TU317961 other upstream 137585 905217 ~ 922096 (+) True G280443
TU318001 other upstream 256364 799775 ~ 799876 (+) True G280464
TU318234 other downstream 314677 1375724 ~ 1375792 (+) True G280680
TU319630 other downstream 1744738 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 1996178 3056084 ~ 3056531 (+) True G282080

Expression Profile