RNA id: TU318089


Basic Information

Item Value
RNA id TU318089
length 277
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G280546
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1089440 ~ 1089716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGGTTTAAAGATAGTTTTTTATTAAATATTTAAAGAGACTTTCCCACAGTGAGGGTAAAAAGGCATTTGATTTGTGTCCTCACTGCAGCAATGGTTCTTACAGAATAGTGCACCAACCCTGACTCTTCAGATTCAGAGAGCTGGCCAGGCTGACCAAGGACAGGTTGCGGTCCTCATAAGGTGGATAACGCAAGAATGTCATGCACTCAATCCGGGTGGTTCGCAGAAGGCAGGACTTCTTATGAGAGAATGCATCAAAACTGTACTGACCATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318111 lncRNA upstream 14131 1074861 ~ 1075309 (+) True G280568
TU318108 lncRNA upstream 21920 1067287 ~ 1067520 (+) True G280565
TU318106 lncRNA upstream 23473 1065456 ~ 1065967 (+) True G280563
TU318104 lncRNA upstream 29534 1059681 ~ 1059906 (+) True G280561
TU318103 lncRNA upstream 30175 1058989 ~ 1059265 (+) True G280560
TU318143 lncRNA downstream 19511 1109227 ~ 1110463 (+) True G280599
TU318158 lncRNA downstream 117559 1207275 ~ 1207574 (+) True G280614
TU318172 lncRNA downstream 153580 1243296 ~ 1243520 (+) True G280628
TU318192 lncRNA downstream 190819 1280535 ~ 1282423 (+) True G280646
TU318208 lncRNA downstream 216182 1305898 ~ 1306142 (+) True G280662
CI01000071_01086147_01088260.mRNA mRNA upstream 1041 1086147 ~ 1088399 (+) True CI01000071_01086147_01088260
CI01000071_00971517_00971823.mRNA mRNA upstream 117223 971037 ~ 972217 (+) True CI01000071_00971517_00971823
CI01000071_00965582_00968758.mRNA mRNA upstream 120079 965001 ~ 969361 (+) True CI01000071_00965582_00968758
CI01000071_00923006_00927912.mRNA mRNA upstream 160952 922752 ~ 928488 (+) True CI01000071_00923006_00927912
CI01000071_00880705_00897817.mRNA mRNA upstream 190995 880705 ~ 898445 (+) True CI01000071_00880705_00897817
CI01000071_01113148_01115596.mRNA mRNA downstream 23432 1113148 ~ 1116722 (+) True CI01000071_01113148_01115596
CI01000071_01139373_01146663.mRNA mRNA downstream 49348 1139064 ~ 1146678 (+) True CI01000071_01139373_01146663
CI01000071_01374449_01376813.mRNA mRNA downstream 284280 1373996 ~ 1376855 (+) False CI01000071_01374449_01376813
CI01000071_01380924_01388813.mRNA mRNA downstream 290842 1380558 ~ 1388948 (+) False CI01000071_01380924_01388813
CI01000071_01392755_01411463.mRNA mRNA downstream 303039 1392755 ~ 1412681 (+) True CI01000071_01392755_01411463
TU317961 other upstream 167344 905217 ~ 922096 (+) True G280443
TU318001 other upstream 286123 799775 ~ 799876 (+) True G280464
TU318234 other downstream 284867 1375724 ~ 1375792 (+) True G280680
TU319630 other downstream 1714928 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 1966368 3056084 ~ 3056531 (+) True G282080

Expression Profile