RNA id: TU318158


Basic Information

Item Value
RNA id TU318158
length 300
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G280614
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1207275 ~ 1207574 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAATCAGTCTATAGTAATTAATGTGATAATGCTTTCAGATTAAAAGTTTTTAGTAACAAGGAGGCATACAGTATAACTAAAACAAATATTAAAAATTAAAGGAATTAAAGGGATAGTTCACCCAAAAATCAATATCCTGTCATTATTTATTTACTCACCATCATGTTGTTCCACATGACTGACTTTCTTCAGTGGAACAGAAAGTGGTCGCAGTGGATTAAGGGATAGTTCACCCAAAAATGAAAATTATCCCATGATTTACTCACCCTCAAGCAATCCCAGGTGTATAAGACCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318143 lncRNA upstream 96812 1109227 ~ 1110463 (+) True G280599
TU318089 lncRNA upstream 117559 1089440 ~ 1089716 (+) True G280546
TU318111 lncRNA upstream 131966 1074861 ~ 1075309 (+) True G280568
TU318108 lncRNA upstream 139755 1067287 ~ 1067520 (+) True G280565
TU318106 lncRNA upstream 141308 1065456 ~ 1065967 (+) True G280563
TU318172 lncRNA downstream 35722 1243296 ~ 1243520 (+) True G280628
TU318192 lncRNA downstream 72961 1280535 ~ 1282423 (+) True G280646
TU318208 lncRNA downstream 98324 1305898 ~ 1306142 (+) True G280662
TU318230 lncRNA downstream 149701 1357275 ~ 1370979 (+) True G280676
TU318244 lncRNA downstream 173098 1380672 ~ 1380903 (+) True CI01000071_01380924_01388813
CI01000071_01139373_01146663.mRNA mRNA upstream 60597 1139064 ~ 1146678 (+) True CI01000071_01139373_01146663
CI01000071_01113148_01115596.mRNA mRNA upstream 90553 1113148 ~ 1116722 (+) True CI01000071_01113148_01115596
CI01000071_01086147_01088260.mRNA mRNA upstream 118876 1086147 ~ 1088399 (+) True CI01000071_01086147_01088260
CI01000071_00971517_00971823.mRNA mRNA upstream 235058 971037 ~ 972217 (+) True CI01000071_00971517_00971823
CI01000071_00965582_00968758.mRNA mRNA upstream 237914 965001 ~ 969361 (+) True CI01000071_00965582_00968758
CI01000071_01374449_01376813.mRNA mRNA downstream 166422 1373996 ~ 1376855 (+) False CI01000071_01374449_01376813
CI01000071_01380924_01388813.mRNA mRNA downstream 172984 1380558 ~ 1388948 (+) False CI01000071_01380924_01388813
CI01000071_01392755_01411463.mRNA mRNA downstream 185181 1392755 ~ 1412681 (+) True CI01000071_01392755_01411463
CI01000071_01416847_01427453.mRNA mRNA downstream 208840 1416414 ~ 1428798 (+) True CI01000071_01416847_01427453
CI01000071_01436960_01442221.mRNA mRNA downstream 229386 1436960 ~ 1442520 (+) True CI01000071_01436960_01442221
TU317961 other upstream 285179 905217 ~ 922096 (+) True G280443
TU318001 other upstream 403958 799775 ~ 799876 (+) True G280464
TU318234 other downstream 167009 1375724 ~ 1375792 (+) True G280680
TU319630 other downstream 1597070 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 1848510 3056084 ~ 3056531 (+) True G282080

Expression Profile