Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU318230 |
| length | 869 |
| lncRNA type | antisense_over |
| GC content | 0.50 |
| exon number | 4 |
| gene id | G280676 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000071 |
| NCBI id | null |
| chromosome length | 5214881 |
| location | 1357275 ~ 1370979 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU318208 | lncRNA | upstream | 51133 | 1305898 ~ 1306142 (+) | True | G280662 |
| TU318192 | lncRNA | upstream | 74852 | 1280535 ~ 1282423 (+) | True | G280646 |
| TU318172 | lncRNA | upstream | 113755 | 1243296 ~ 1243520 (+) | True | G280628 |
| TU318158 | lncRNA | upstream | 149701 | 1207275 ~ 1207574 (+) | True | G280614 |
| TU318143 | lncRNA | upstream | 246812 | 1109227 ~ 1110463 (+) | True | G280599 |
| TU318244 | lncRNA | downstream | 9693 | 1380672 ~ 1380903 (+) | True | CI01000071_01380924_01388813 |
| TU318249 | lncRNA | downstream | 95269 | 1466248 ~ 1517469 (+) | True | G280695 |
| TU318261 | lncRNA | downstream | 125384 | 1496363 ~ 1496634 (+) | True | G280705 |
| TU318274 | lncRNA | downstream | 151012 | 1521991 ~ 1528807 (+) | True | CI01000071_01514470_01525572 |
| TU318300 | lncRNA | downstream | 360152 | 1731131 ~ 1731351 (+) | True | G280740 |
| CI01000071_01139373_01146663.mRNA | mRNA | upstream | 210597 | 1139064 ~ 1146678 (+) | True | CI01000071_01139373_01146663 |
| CI01000071_01113148_01115596.mRNA | mRNA | upstream | 240553 | 1113148 ~ 1116722 (+) | True | CI01000071_01113148_01115596 |
| CI01000071_01086147_01088260.mRNA | mRNA | upstream | 268876 | 1086147 ~ 1088399 (+) | True | CI01000071_01086147_01088260 |
| CI01000071_00971517_00971823.mRNA | mRNA | upstream | 385058 | 971037 ~ 972217 (+) | True | CI01000071_00971517_00971823 |
| CI01000071_00965582_00968758.mRNA | mRNA | upstream | 387914 | 965001 ~ 969361 (+) | True | CI01000071_00965582_00968758 |
| CI01000071_01374449_01376813.mRNA | mRNA | downstream | 3017 | 1373996 ~ 1376855 (+) | False | CI01000071_01374449_01376813 |
| CI01000071_01380924_01388813.mRNA | mRNA | downstream | 9579 | 1380558 ~ 1388948 (+) | False | CI01000071_01380924_01388813 |
| CI01000071_01392755_01411463.mRNA | mRNA | downstream | 21776 | 1392755 ~ 1412681 (+) | True | CI01000071_01392755_01411463 |
| CI01000071_01416847_01427453.mRNA | mRNA | downstream | 45435 | 1416414 ~ 1428798 (+) | True | CI01000071_01416847_01427453 |
| CI01000071_01436960_01442221.mRNA | mRNA | downstream | 65981 | 1436960 ~ 1442520 (+) | True | CI01000071_01436960_01442221 |
| TU317961 | other | upstream | 435179 | 905217 ~ 922096 (+) | True | G280443 |
| TU318001 | other | upstream | 553958 | 799775 ~ 799876 (+) | True | G280464 |
| TU318234 | other | downstream | 3604 | 1375724 ~ 1375792 (+) | True | G280680 |
| TU319630 | other | downstream | 1433665 | 2804644 ~ 2804806 (+) | True | G281974 |
| TU319744 | other | downstream | 1685105 | 3056084 ~ 3056531 (+) | True | G282080 |
