RNA id: TU318261


Basic Information

Item Value
RNA id TU318261
length 236
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G280705
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1496363 ~ 1496634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGCTTGAGAGATTTGACTCAGTTGAGTTTTTTACACACACACACACACACACACACACACACACACACACACACACACAGAGAGAGGTTTGTTTTGCAATCAAAATGAGGACATTCCATAGGCGTAATGGTTTTTATACTGTACAAACTGAACATTCTATCCCCTACACTACCCCTAACCCTAAACCTACCCATCACAGAAAACATTCATTTTTAATAAAATTTCATTTAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318244 lncRNA upstream 115460 1380672 ~ 1380903 (+) True CI01000071_01380924_01388813
TU318230 lncRNA upstream 125384 1357275 ~ 1370979 (+) True G280676
TU318208 lncRNA upstream 190221 1305898 ~ 1306142 (+) True G280662
TU318192 lncRNA upstream 213940 1280535 ~ 1282423 (+) True G280646
TU318172 lncRNA upstream 252843 1243296 ~ 1243520 (+) True G280628
TU318274 lncRNA downstream 25357 1521991 ~ 1528807 (+) True CI01000071_01514470_01525572
TU318300 lncRNA downstream 234497 1731131 ~ 1731351 (+) True G280740
TU318308 lncRNA downstream 244257 1740891 ~ 1742345 (+) True G280745
TU318335 lncRNA downstream 287982 1784616 ~ 1784816 (+) True G280772
TU318344 lncRNA downstream 311442 1808076 ~ 1808304 (+) True G280781
CI01000071_01452292_01490229.mRNA mRNA upstream 5451 1450564 ~ 1490912 (+) True CI01000071_01452292_01490229
CI01000071_01443137_01445109.mRNA mRNA upstream 51197 1443137 ~ 1445166 (+) True CI01000071_01443137_01445109
CI01000071_01436960_01442221.mRNA mRNA upstream 53843 1436960 ~ 1442520 (+) True CI01000071_01436960_01442221
CI01000071_01416847_01427453.mRNA mRNA upstream 67565 1416414 ~ 1428798 (+) True CI01000071_01416847_01427453
CI01000071_01392755_01411463.mRNA mRNA upstream 83682 1392755 ~ 1412681 (+) True CI01000071_01392755_01411463
CI01000071_01514470_01525572.mRNA mRNA downstream 17681 1514315 ~ 1525595 (+) False CI01000071_01514470_01525572
CI01000071_01580310_01581199.mRNA mRNA downstream 83676 1580310 ~ 1581205 (+) True CI01000071_01580310_01581199
CI01000071_01677282_01720849.mRNA mRNA downstream 180648 1677282 ~ 1720849 (+) True CI01000071_01677282_01720849
CI01000071_01909999_01929819.mRNA mRNA downstream 412444 1909078 ~ 1930261 (+) True CI01000071_01909999_01929819
CI01000071_01966426_01969786.mRNA mRNA downstream 469459 1966093 ~ 1969786 (+) True CI01000071_01966426_01969786
TU318234 other upstream 118693 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 574267 905217 ~ 922096 (+) True G280443
TU318001 other upstream 693046 799775 ~ 799876 (+) True G280464
TU319630 other downstream 1308010 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 1559450 3056084 ~ 3056531 (+) True G282080

Expression Profile