RNA id: TU318308



Basic Information


Item Value
RNA id TU318308
length 1455
lncRNA type intronic
GC content 0.40
exon number 1
gene id G280745
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1740891 ~ 1742345 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGTACTCCAAAACATCAACTTTCTGTGTAAGACTGTAAAAAATATAGACGTAGTGTCCGTGACGTCACCCGTAGATTTCTGTAAAGCATTTTTGAAGTCCATAAGCGGCCGTTGCCATCTTGGCAGCGCGTCATCGCCCGTCACTCCCGGATAACTGAAAATGGGCAAAGAGGCAGAACGTAGTTGGAACTGAGGCTCAAAGTGATCATGTTAGCAGGCTAAGGAGCTATCTATCTATCTTAGACACTATCTAAAATATTAATAAAGATAACAAGCTATATCATTTGAAAGTTCTAAAGGTTTACCGTCAATCTACGGTGTCTTTTTTATGATATAAATGCTCCAGCAACAGTAATATTGTAATTTGTGTCGGGTGTGCAAATGACAACACGCAAAATCAAAACGGGACTTCATACCTTTGTAATGAAATAGCGATTGTGAGATGAATCCAATCCGTCGCACTTGGGTAAAATGTCCATGAGTGTCCATTGAAAAACAAACAACACTTTTTGTCCAGAAAAGCGATAAATCCAAGAAATATTGATATATTGTCCATTGTTTGCATCACATTTCTTCGGAATGATCTGCTCTCCATCATCGTTCTTCAAGAAATTATGCAATCTGAGCAGCGTTTATGTTGTAAAACTGTATATGATCATATACATTGGACTCTCACAAACAAATGAGCCTGCGTCCAAAGTATAATTTTTCAAAATAGTGCAGCAGTTTTAGTTATAATATCCAAGCAGTGCTGTCGGATTTTGTGGTGTCTTGAGAGGCATATTCTCCAGCCTTTGTCATTGTAGTAAATCTGACGAACAAAACTTTTAGCCAATGCCAAGACGATCCAACAACGTGTGTTCTGTTTATCTTTCGCATGTGTGCACATGTGCACAGACGACCATAAACCGCACCGCAAGCCACATTATTTGATAATTGTGTGAAATAATCCCGAAAAAAGCACAAACACGGCAGAGATGCCAAATTCAGTGGCTGGAATTAGCTGAGGTAACGTGACGGCTCACAGACAGCAGCGGCAATCCACCTGTCACTCAAGTGGCCACGCCCTTAATTATACAGAACTTTAAGGCTTAATATAATTTAAACGGATGAGTTTAAAAAAAATTCACCCTCCTCAGAGTTGTCATGAAGGGCAAAATTAGCTGTATAGACCAAAACCACAATTTGTACCAGGCTGTAAACATGTTTTTTCTGCTGTAAAGTTGGGCATTTTAACATGGTCTCTTTTAGAGCCTGTCCCTAGCGGCCAGTCGATGAATTGCAGTTTAAGTCACATCCGTATTGGTTTCAAGAGAAACTGGGGGAGGTTGCCGCTTGGTAAATACGCATCCTACTACAGCTGTATATTAAACATCAAATATGAACTGATTGGCTGGTTTTATGTCCCTTCACACAGCATTATTGCTTTAAAGGGATAGTTCATCAAAAACAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU318300 lncRNA upstream 9540 1731131 ~ 1731351 (+) True G280740
TU318274 lncRNA upstream 212084 1521991 ~ 1528807 (+) True CI01000071_01514470_01525572
TU318249 lncRNA upstream 223422 1466248 ~ 1517469 (+) True G280695
TU318261 lncRNA upstream 244257 1496363 ~ 1496634 (+) True G280705
TU318244 lncRNA upstream 359988 1380672 ~ 1380903 (+) True CI01000071_01380924_01388813
TU318335 lncRNA downstream 42271 1784616 ~ 1784816 (+) True G280772
TU318344 lncRNA downstream 65731 1808076 ~ 1808304 (+) True G280781
TU318346 lncRNA downstream 69278 1811623 ~ 1812051 (+) True G280783
TU318350 lncRNA downstream 78859 1821204 ~ 1821479 (+) True G280787
TU319006 lncRNA downstream 145331 1887676 ~ 1888021 (+) True G281377
CI01000071_01677282_01720849.mRNA mRNA upstream 20042 1677282 ~ 1720849 (+) True CI01000071_01677282_01720849
CI01000071_01580310_01581199.mRNA mRNA upstream 159686 1580310 ~ 1581205 (+) True CI01000071_01580310_01581199
CI01000071_01514470_01525572.mRNA mRNA upstream 215296 1514315 ~ 1525595 (+) False CI01000071_01514470_01525572
CI01000071_01452292_01490229.mRNA mRNA upstream 249979 1450564 ~ 1490912 (+) True CI01000071_01452292_01490229
CI01000071_01443137_01445109.mRNA mRNA upstream 295725 1443137 ~ 1445166 (+) True CI01000071_01443137_01445109
CI01000071_01909999_01929819.mRNA mRNA downstream 166733 1909078 ~ 1930261 (+) True CI01000071_01909999_01929819
CI01000071_01966426_01969786.mRNA mRNA downstream 223748 1966093 ~ 1969786 (+) True CI01000071_01966426_01969786
CI01000071_02000540_02048898.mRNA mRNA downstream 258040 2000385 ~ 2049583 (+) False CI01000071_02000540_02048898
CI01000071_02063411_02065517.mRNA mRNA downstream 321066 2063411 ~ 2065565 (+) True CI01000071_02063411_02065517
CI01000071_02105220_02105800.mRNA mRNA downstream 362875 2105220 ~ 2106022 (+) True CI01000071_02105220_02105800
TU318234 other upstream 363221 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 818795 905217 ~ 922096 (+) True G280443
TU318001 other upstream 937574 799775 ~ 799876 (+) True G280464
TU319630 other downstream 1062299 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 1313739 3056084 ~ 3056531 (+) True G282080

Expression Profile