RNA id: TU318344


Basic Information

Item Value
RNA id TU318344
length 229
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G280781
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1808076 ~ 1808304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTCACTTACAGCTCTCTGCTTGCAGCACGTCAGTCACGCTCATCGGGAAAGTGAGTGAAACACACACACAAACACACATTTTTATCAAATACGGCATTAATAGCGGTTCACTTCCGCAATTCGGTACGTTTGCGTTCAGATCAGAAGCAAACCGTACCGGAGTTCATTTGAACCACACCCCAGACCACCCTATTTAAGCGGACTCGGGTACGGTTCGCGGGTGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318335 lncRNA upstream 23260 1784616 ~ 1784816 (+) True G280772
TU318308 lncRNA upstream 65731 1740891 ~ 1742345 (+) True G280745
TU318300 lncRNA upstream 76725 1731131 ~ 1731351 (+) True G280740
TU318274 lncRNA upstream 279269 1521991 ~ 1528807 (+) True CI01000071_01514470_01525572
TU318249 lncRNA upstream 290607 1466248 ~ 1517469 (+) True G280695
TU318346 lncRNA downstream 3319 1811623 ~ 1812051 (+) True G280783
TU318350 lncRNA downstream 12900 1821204 ~ 1821479 (+) True G280787
TU319006 lncRNA downstream 79372 1887676 ~ 1888021 (+) True G281377
TU319048 lncRNA downstream 175218 1983522 ~ 1992903 (+) True G281417
TU319045 lncRNA downstream 184768 1993072 ~ 2002064 (+) True CI01000071_02000540_02048898
CI01000071_01677282_01720849.mRNA mRNA upstream 87227 1677282 ~ 1720849 (+) True CI01000071_01677282_01720849
CI01000071_01580310_01581199.mRNA mRNA upstream 226871 1580310 ~ 1581205 (+) True CI01000071_01580310_01581199
CI01000071_01514470_01525572.mRNA mRNA upstream 282481 1514315 ~ 1525595 (+) False CI01000071_01514470_01525572
CI01000071_01452292_01490229.mRNA mRNA upstream 317164 1450564 ~ 1490912 (+) True CI01000071_01452292_01490229
CI01000071_01443137_01445109.mRNA mRNA upstream 362910 1443137 ~ 1445166 (+) True CI01000071_01443137_01445109
CI01000071_01909999_01929819.mRNA mRNA downstream 100774 1909078 ~ 1930261 (+) True CI01000071_01909999_01929819
CI01000071_01966426_01969786.mRNA mRNA downstream 157789 1966093 ~ 1969786 (+) True CI01000071_01966426_01969786
CI01000071_02000540_02048898.mRNA mRNA downstream 192081 2000385 ~ 2049583 (+) False CI01000071_02000540_02048898
CI01000071_02063411_02065517.mRNA mRNA downstream 255107 2063411 ~ 2065565 (+) True CI01000071_02063411_02065517
CI01000071_02105220_02105800.mRNA mRNA downstream 296916 2105220 ~ 2106022 (+) True CI01000071_02105220_02105800
TU318234 other upstream 430406 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 885980 905217 ~ 922096 (+) True G280443
TU318001 other upstream 1004759 799775 ~ 799876 (+) True G280464
TU319630 other downstream 996340 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 1247780 3056084 ~ 3056531 (+) True G282080

Expression Profile