RNA id: TU319649



Basic Information


Item Value
RNA id TU319649
length 260
lncRNA type intronic
GC content 0.35
exon number 1
gene id G281989
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 2755218 ~ 2755477 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTTTTCTTGCACAAAGGACAGAGTTACTGCTGCTAAGAGGATAGACTTCCTCCACTTACGCTCAAGTTTAAATATTAATGTCACTCTCGTGAATAATTGATATCACAATTTATTAATCTCAACAGGAACACCAGACCTAAAGTGACCAGGAAAAAAAGATATACTGTGGGAAGTTTTAACCATTTCACAGATAAAATGGGTTTAAACAAAGAGTCAGTGTTGAGGCTGCAGTTATCAATTAAAGTTCTAAAGTCCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU319648 lncRNA upstream 5769 2749220 ~ 2749449 (+) True G281988
TU319622 lncRNA upstream 50407 2704591 ~ 2704811 (+) True G281966
TU319618 lncRNA upstream 58625 2696321 ~ 2696593 (+) True G281962
TU319610 lncRNA upstream 88338 2666658 ~ 2666880 (+) True G281954
TU319381 lncRNA upstream 235667 2519223 ~ 2519551 (+) True G281742
TU319652 lncRNA downstream 5344 2760821 ~ 2761054 (+) True G281992
TU319678 lncRNA downstream 45065 2800542 ~ 2800781 (+) True G282014
TU319636 lncRNA downstream 78468 2835565 ~ 2837303 (+) True G281976
TU319739 lncRNA downstream 295643 3051120 ~ 3051524 (+) True G282075
TU319740 lncRNA downstream 296304 3051781 ~ 3052472 (+) True G282076
CI01000071_02656286_02658917.mRNA mRNA upstream 96121 2656286 ~ 2659097 (+) True CI01000071_02656286_02658917
CI01000071_02539510_02615505.mRNA mRNA upstream 138925 2539183 ~ 2616293 (+) True CI01000071_02539510_02615505
CI01000071_02417387_02420895.mRNA mRNA upstream 333921 2416030 ~ 2421297 (+) True CI01000071_02417387_02420895
CI01000071_02329452_02331682.mRNA mRNA upstream 423187 2329232 ~ 2332031 (+) True CI01000071_02329452_02331682
CI01000071_02137176_02137478.mRNA mRNA upstream 617309 2136006 ~ 2137909 (+) True CI01000071_02137176_02137478
CI01000071_02770135_02797577.mRNA mRNA downstream 13760 2769237 ~ 2797773 (+) True CI01000071_02770135_02797577
CI01000071_02815324_02834097.mRNA mRNA downstream 59650 2815127 ~ 2834699 (+) False CI01000071_02815324_02834097
CI01000071_02838185_02847470.mRNA mRNA downstream 82671 2838148 ~ 2847611 (+) True CI01000071_02838185_02847470
CI01000071_02927971_02953988.mRNA mRNA downstream 171172 2926649 ~ 2954167 (+) True CI01000071_02927971_02953988
CI01000071_02960341_02966088.mRNA mRNA downstream 204560 2960037 ~ 2966446 (+) True CI01000071_02960341_02966088
TU318234 other upstream 1377548 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 1833122 905217 ~ 922096 (+) True G280443
TU318001 other upstream 1951901 799775 ~ 799876 (+) True G280464
TU319630 other downstream 49167 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 300607 3056084 ~ 3056531 (+) True G282080

Expression Profile