RNA id: TU319739



Basic Information


Item Value
RNA id TU319739
length 405
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G282075
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 3051120 ~ 3051524 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCCAAGTTTAATCCAAACAGGCAAAGGGCAGATACAACACAACGTAGTAAGACGGTGAACGGACAAGGAACTGAACACAAACAGGAACTGATGACGTGCAGCTGTGATGGTGGTTAGTGTCCATGGTAACTGATGAGTGGCGGGAACTTAGAATAAGGGAGCACATGTGACAAGAGAAAACCAAAACAAACAGAACATGAGGGTGACTGTGACATTACATCCCCCTCCGGCGAGGCGCGTCCTCACGGCGTAAAGGAACATCCACGGGGAGGGCCGGAGGGGGTTTGGAGGCGGGCGAAGTGATGGTGAAGAAGGAGTGGTGAAGGGAGGACGACGATCCCCTGGTGGCGTTGGTGGTAGACCGCCGATGGCATAGACCCAGAGCTCCCCAGTGCCGACAGCTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU319636 lncRNA upstream 213817 2835565 ~ 2837303 (+) True G281976
TU319678 lncRNA upstream 250339 2800542 ~ 2800781 (+) True G282014
TU319652 lncRNA upstream 290066 2760821 ~ 2761054 (+) True G281992
TU319649 lncRNA upstream 295643 2755218 ~ 2755477 (+) True G281989
TU319648 lncRNA upstream 301671 2749220 ~ 2749449 (+) True G281988
TU319740 lncRNA downstream 257 3051781 ~ 3052472 (+) True G282076
TU319746 lncRNA downstream 6790 3058314 ~ 3058519 (+) True G282082
TU319754 lncRNA downstream 17081 3068605 ~ 3068899 (+) True G282089
TU319758 lncRNA downstream 20496 3072020 ~ 3072255 (+) True G282093
TU319776 lncRNA downstream 65986 3117510 ~ 3117800 (+) True G282108
CI01000071_03016024_03022596.mRNA mRNA upstream 28126 3014670 ~ 3022994 (+) True CI01000071_03016024_03022596
CI01000071_02960341_02966088.mRNA mRNA upstream 84674 2960037 ~ 2966446 (+) True CI01000071_02960341_02966088
CI01000071_02927971_02953988.mRNA mRNA upstream 96953 2926649 ~ 2954167 (+) True CI01000071_02927971_02953988
CI01000071_02838185_02847470.mRNA mRNA upstream 203509 2838148 ~ 2847611 (+) True CI01000071_02838185_02847470
CI01000071_02815324_02834097.mRNA mRNA upstream 216421 2815127 ~ 2834699 (+) False CI01000071_02815324_02834097
CI01000071_03062277_03064334.mRNA mRNA downstream 10314 3061838 ~ 3064706 (+) True CI01000071_03062277_03064334
CI01000071_03108610_03108994.mRNA mRNA downstream 56920 3108444 ~ 3108994 (+) True CI01000071_03108610_03108994
CI01000071_03329447_03356262.mRNA mRNA downstream 277923 3329447 ~ 3357152 (+) True CI01000071_03329447_03356262
CI01000071_03361493_03387786.mRNA mRNA downstream 309969 3361493 ~ 3387878 (+) False CI01000071_03361493_03387786
CI01000071_03414821_03439810.mRNA mRNA downstream 363297 3414821 ~ 3439810 (+) True CI01000071_03414821_03439810
TU319630 other upstream 222516 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 1673450 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 2129024 905217 ~ 922096 (+) True G280443
TU318001 other upstream 2247803 799775 ~ 799876 (+) True G280464
TU319744 other downstream 4560 3056084 ~ 3056531 (+) True G282080

Expression Profile