RNA id: CI01000075_01506719_01516006.mRNA


Basic Information

Item Value
RNA id CI01000075_01506719_01516006.mRNA
length 958
RNA type mRNA
GC content 0.51
exon number 4
gene id CI01000075_01506719_01516006
representative False

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1505543 ~ 1516053 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAAACCAGCACAATTCCAGCACAAATACATACATACTGTACATATCTAGGCTAAAGGATACACCTTTCATCTGCAGCGCCCAGTCCTAGTTTGACACACATTTCCACCGTCTGCACGTGCTGATCCCGCGTCCTCACAGGCACCTGCTGTCCTGTCCCATATAATCATTATCTCCTGAAAAACTGGCACTTCGCAGCTTAGCGCTCTGATCTGTGTGACCTTTTCAAATGAGCAATCTGAGAAATTATACTTTCACCCAGGACAGCGCTGCTCTCATTTCTCCGAACGGCAGAAAAATCATTTCACGCGTCACTGGACTAATCCAGCCTCTCCAGTCATGTTCAACGACAGATCTGCCACCTTCAGCACACGGCCAATACAAATAACACCATCACCGGCCGTGTAACCATGCCGACGGGATGTGTATCTTCATTTGTACTCGTCACATGACAACATCAAGGACCTTGTTACTCAAAAAACTCACAAGCGTTACAGAGACGAACAGATGGAGCGAATCACTCAGCAGAAAAGGAGAGGAAACAAATACACCCTGAAGATGAAGCTGGAGCTGGAGTTCATAATCAGCTTATCTGATCCATGTTCTCTGATCTCAACAGCTGGAAGGGTCTCTCCTCGGCGTTTAGTTACGCATGAATGTAAAAGATCCACCGCATACCGAGATCTGCAGCATCCATCCCGTATCCCGCGCCGACCACCGCGTCCGCGTCCTCCGGCAGCGCGGAACATCCTCCGGCCGCAGCAGCTCCCTCCATCAGACCCGGATCAAACGCGCTCGATCACACGCTCGTGCTCATGTGAGTCCGATTCGCTCGAGCGCCGCTGCTGCTGCTACGCCAGCGATGACGTCACCGGGCCCGGGGCAGCTCCGATGCGACGTTTTTTCTAGTATCGCCTTTCAAAACGACGTCAGCCATGGAGGAATTTGCGTAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328220 lncRNA upstream 2307 1494413 ~ 1503903 (+) True G289390
TU328161 lncRNA upstream 39819 1465437 ~ 1466391 (+) True G289340
TU328208 lncRNA upstream 58953 1447045 ~ 1447257 (+) True G289379
TU328207 lncRNA upstream 60342 1445490 ~ 1445868 (+) True G289378
TU328206 lncRNA upstream 60900 1445106 ~ 1445310 (+) True G289377
TU328228 lncRNA downstream 271 1516324 ~ 1516605 (+) True G289397
TU328150 lncRNA downstream 2937 1518990 ~ 1524862 (+) True G289329
TU328229 lncRNA downstream 14300 1530353 ~ 1530598 (+) True G289398
TU328236 lncRNA downstream 27610 1543663 ~ 1545087 (+) True G289401
TU328237 lncRNA downstream 29430 1545483 ~ 1547588 (+) True G289402
CI01000075_01466937_01467865.mRNA mRNA upstream 38149 1466937 ~ 1468061 (+) True CI01000075_01466937_01467865
CI01000075_01451280_01460210.mRNA mRNA upstream 44574 1451280 ~ 1461636 (+) True CI01000075_01451280_01460210
CI01000075_01404076_01444348.mRNA mRNA upstream 61800 1404076 ~ 1444410 (+) False CI01000075_01404076_01444348
CI01000075_01364135_01365758.mRNA mRNA upstream 140367 1364135 ~ 1365843 (+) False CI01000075_01364135_01365758
CI01000075_01159479_01160597.mRNA mRNA upstream 345547 1159479 ~ 1160663 (+) True CI01000075_01159479_01160597
CI01000075_01526289_01529484.mRNA mRNA downstream 10188 1526241 ~ 1529656 (+) True CI01000075_01526289_01529484
CI01000075_01609077_01609286.mRNA mRNA downstream 93024 1609077 ~ 1610221 (+) True CI01000075_01609077_01609286
TU328149 other upstream 89120 1384043 ~ 1397668 (+) True G289328
TU328138 other upstream 140520 1328786 ~ 1363443 (+) True G289317
TU328137 other upstream 140520 1353492 ~ 1363443 (+) False G289317
TU328135 other upstream 140520 1362339 ~ 1363443 (+) True G289317
TU327647 other upstream 583794 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328140 other downstream 84128 1600181 ~ 1605306 (+) True G289319

Expression Profile