RNA id: TU327337


Basic Information

Item Value
RNA id TU327337
length 616
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G288668
representative False

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 20224 ~ 22415 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAATACAATTAGTTAACTTCTGTGCTGCACTAAACTGAATTATTAATACTTTAAATTATGATTTGTTTTATGAATAGATCCAGAATCATTTCAGAGAGAACTGCAATGCATTTGTGAATCAATTTTCCTCCAGCCCTGATGTTTAAATAATACTGTAAAGACGTGACGCAGCACTAGTGTATCAAAAATAAAGCTTCCCCTCCTGTACCGTAACATCGCTGCTCATGTTCTTCCAACATAACATCCTCTCCACTGAAGTTATTGCTAGACTTTGAACAGAAAGGGCAGAAAACAAAGCAAGAAGAGTGAGAAGATACTGAGAGTATCAGTGCAGAAACTACTGAAGCAGAACTACGCCCTCTAGTGGATGCGGCGCCTCTCGCTGCGGCCGTCAGGATGAGTGTCTCTCGTCTCTCAGATCGCACTATTTACTGATGAGTTTGACCAGACTCTGTCGAAGGTCGTTGAGGTCAAAGATCTTGACGTCGAGGATCTGAACGACCCTCTGCACCTCGTTCTCAGAGCGGTCACGATCTTCCAGCGCTGAGGCCAGGTTTTGTTCCGCGTTTTGCACGCGCCGCTCCAAATCAACGTTACGCATCTCTAACTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327340 lncRNA upstream 226 20224 ~ 21493 (+) False G288668
TU327336 lncRNA upstream 331 20224 ~ 21388 (+) False G288668
TU327349 lncRNA downstream 2008 24342 ~ 25685 (+) True G288669
TU327350 lncRNA downstream 3632 25966 ~ 27795 (+) True G288670
TU327365 lncRNA downstream 35133 57467 ~ 57889 (+) True G288685
TU327366 lncRNA downstream 35595 57929 ~ 58240 (+) True G288686
TU327315 lncRNA downstream 36048 58382 ~ 60789 (+) True G288647
CI01000075_00015676_00016381.mRNA mRNA upstream 5290 15676 ~ 16429 (+) True CI01000075_00015676_00016381
CI01000075_00001171_00013300.mRNA mRNA upstream 8358 1171 ~ 13361 (+) True CI01000075_00001171_00013300
CI01000075_00093704_00094561.mRNA mRNA downstream 70877 93211 ~ 94652 (+) True CI01000075_00093704_00094561
CI01000075_00110314_00117133.mRNA mRNA downstream 87694 110028 ~ 117267 (+) True CI01000075_00110314_00117133
CI01000075_00190821_00197570.mRNA mRNA downstream 168232 190566 ~ 197909 (+) True CI01000075_00190821_00197570
CI01000075_00216589_00224690.mRNA mRNA downstream 193795 216129 ~ 224858 (+) True CI01000075_00216589_00224690
CI01000075_00252158_00255198.mRNA mRNA downstream 229824 252158 ~ 255206 (+) True CI01000075_00252158_00255198
TU327394 other downstream 213064 235398 ~ 237271 (+) True G288708
TU327465 other downstream 282774 305108 ~ 307921 (+) False G288755
TU327648 other downstream 895167 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other downstream 895580 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328138 other downstream 1306452 1328786 ~ 1363443 (+) True G289317

Expression Profile