RNA id: TU327366


Basic Information

Item Value
RNA id TU327366
length 312
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G288686
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 57929 ~ 58240 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGACTTTATTCAACAAATTTGTCTCTCCCATCATTCTCCTACGCTATTTACGTTCAGCGCTTCCAGGTTCTGACAGGGGAGAGATGAATTTGTTGAATAATGTCGTTATTTTTGTTTTGGTGCACAAAAAGTAGTATAAAGACATCGTTAAAATAGTCCACGACTACACTGGTTCAACCTTAATGTTATGAAATGACAAGAATACTTTTTGTGCGTAACCGTCACATCCTTTTGATTTTCGTGGCAAAAACGTCCCGAGTCCTTCACATAAAAATCAGTCTACACGCTTTTATAGACAACCTAGAAAGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327365 lncRNA upstream 40 57467 ~ 57889 (+) True G288685
TU327350 lncRNA upstream 30134 25966 ~ 27795 (+) True G288670
TU327349 lncRNA upstream 32244 24342 ~ 25685 (+) True G288669
TU327338 lncRNA upstream 35514 21719 ~ 22415 (+) True G288668
TU327337 lncRNA upstream 35595 21719 ~ 22334 (+) False G288668
TU327315 lncRNA downstream 142 58382 ~ 60789 (+) True G288647
TU327317 lncRNA downstream 4619 62859 ~ 63099 (+) True G288649
TU327320 lncRNA downstream 5485 63725 ~ 64024 (+) True G288652
TU327323 lncRNA downstream 6124 64364 ~ 64947 (+) True G288655
TU327325 lncRNA downstream 10155 68395 ~ 69408 (+) True G288657
CI01000075_00015676_00016381.mRNA mRNA upstream 41500 15676 ~ 16429 (+) True CI01000075_00015676_00016381
CI01000075_00001171_00013300.mRNA mRNA upstream 44568 1171 ~ 13361 (+) True CI01000075_00001171_00013300
CI01000075_00093704_00094561.mRNA mRNA downstream 34971 93211 ~ 94652 (+) True CI01000075_00093704_00094561
CI01000075_00110314_00117133.mRNA mRNA downstream 51788 110028 ~ 117267 (+) True CI01000075_00110314_00117133
CI01000075_00190821_00197570.mRNA mRNA downstream 132326 190566 ~ 197909 (+) True CI01000075_00190821_00197570
CI01000075_00216589_00224690.mRNA mRNA downstream 157889 216129 ~ 224858 (+) True CI01000075_00216589_00224690
CI01000075_00252158_00255198.mRNA mRNA downstream 193918 252158 ~ 255206 (+) True CI01000075_00252158_00255198
TU327394 other downstream 177158 235398 ~ 237271 (+) True G288708
TU327465 other downstream 246868 305108 ~ 307921 (+) False G288755
TU327648 other downstream 859261 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other downstream 859674 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328138 other downstream 1270546 1328786 ~ 1363443 (+) True G289317

Expression Profile