Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU327315 |
| length | 2408 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G288647 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000075 |
| NCBI id | null |
| chromosome length | 1642109 |
| location | 58382 ~ 60789 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU327366 | lncRNA | upstream | 142 | 57929 ~ 58240 (+) | True | G288686 |
| TU327365 | lncRNA | upstream | 493 | 57467 ~ 57889 (+) | True | G288685 |
| TU327350 | lncRNA | upstream | 30587 | 25966 ~ 27795 (+) | True | G288670 |
| TU327349 | lncRNA | upstream | 32697 | 24342 ~ 25685 (+) | True | G288669 |
| TU327338 | lncRNA | upstream | 35967 | 21719 ~ 22415 (+) | True | G288668 |
| TU327317 | lncRNA | downstream | 2070 | 62859 ~ 63099 (+) | True | G288649 |
| TU327320 | lncRNA | downstream | 2936 | 63725 ~ 64024 (+) | True | G288652 |
| TU327323 | lncRNA | downstream | 3575 | 64364 ~ 64947 (+) | True | G288655 |
| TU327325 | lncRNA | downstream | 7606 | 68395 ~ 69408 (+) | True | G288657 |
| TU327330 | lncRNA | downstream | 24098 | 84887 ~ 86414 (+) | True | G288662 |
| CI01000075_00015676_00016381.mRNA | mRNA | upstream | 41953 | 15676 ~ 16429 (+) | True | CI01000075_00015676_00016381 |
| CI01000075_00001171_00013300.mRNA | mRNA | upstream | 45021 | 1171 ~ 13361 (+) | True | CI01000075_00001171_00013300 |
| CI01000075_00093704_00094561.mRNA | mRNA | downstream | 32422 | 93211 ~ 94652 (+) | True | CI01000075_00093704_00094561 |
| CI01000075_00110314_00117133.mRNA | mRNA | downstream | 49239 | 110028 ~ 117267 (+) | True | CI01000075_00110314_00117133 |
| CI01000075_00190821_00197570.mRNA | mRNA | downstream | 129777 | 190566 ~ 197909 (+) | True | CI01000075_00190821_00197570 |
| CI01000075_00216589_00224690.mRNA | mRNA | downstream | 155340 | 216129 ~ 224858 (+) | True | CI01000075_00216589_00224690 |
| CI01000075_00252158_00255198.mRNA | mRNA | downstream | 191369 | 252158 ~ 255206 (+) | True | CI01000075_00252158_00255198 |
| TU327394 | other | downstream | 174609 | 235398 ~ 237271 (+) | True | G288708 |
| TU327465 | other | downstream | 244319 | 305108 ~ 307921 (+) | False | G288755 |
| TU327648 | other | downstream | 856712 | 917501 ~ 922416 (+) | False | CI01000075_00917306_00921588 |
| TU327647 | other | downstream | 857125 | 917914 ~ 922416 (+) | True | CI01000075_00917306_00921588 |
| TU328138 | other | downstream | 1267997 | 1328786 ~ 1363443 (+) | True | G289317 |
