RNA id: TU327323



Basic Information


Item Value
RNA id TU327323
length 584
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G288655
representative True

Chromosome Information


Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 64364 ~ 64947 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTGATATGCAGTCATGTGTCATACTCACAGGGTTAATTGTGTTAACCAGCTTGCGCGGTTTGCTGAACTGCATGAGACTTTCTCTCAGGTTGTTGAGCGGACCCTCCACCAGAACCTTCTGCTCCTTGTAGTAGTTGAGCAGGTGGTTCCACAGAGGCTGCTTGGACAGAGCCTTAGGATTGCCCACAATGATCACACCATATCTGCACACATACACAAATTTGTGTATATGATTAGAGCATTATTTATACACAGTTTCCTTGATCTTTGTTTTCTCACTCAAAGTCTGCTATTGTTACCTGGCTCTGGTTAGCGCCACATTGAGACGACGTGGGTCGTTCAGGAAGCCGATGCCCTGGTGCTCATTAGCTCTGACACAAGACAGGATGATGAAGTCCTTCTCTCTGCCCTGGAACGCATCCACACTGGCGATCTCCACCTCCTGTAGACACACAGAGGCATCAGTAAATCACTGACATGCTGCTGTCTGAATGCTCGATGCCATTACTTCTACAGCCCTGTGTCTCTATCTAATCACTTTTTACCAAATACGAGGAAATACTCTTTTCTTCTCACCCTAATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU327320 lncRNA upstream 340 63725 ~ 64024 (+) True G288652
TU327317 lncRNA upstream 1265 62859 ~ 63099 (+) True G288649
TU327315 lncRNA upstream 3575 58382 ~ 60789 (+) True G288647
TU327366 lncRNA upstream 6124 57929 ~ 58240 (+) True G288686
TU327365 lncRNA upstream 6475 57467 ~ 57889 (+) True G288685
TU327325 lncRNA downstream 3448 68395 ~ 69408 (+) True G288657
TU327330 lncRNA downstream 19940 84887 ~ 86414 (+) True G288662
TU327382 lncRNA downstream 42479 107426 ~ 107718 (+) False G288699
TU327385 lncRNA downstream 42479 107426 ~ 107743 (+) True G288699
TU327387 lncRNA downstream 65754 130701 ~ 130970 (+) True G288701
CI01000075_00015676_00016381.mRNA mRNA upstream 47935 15676 ~ 16429 (+) True CI01000075_00015676_00016381
CI01000075_00001171_00013300.mRNA mRNA upstream 51003 1171 ~ 13361 (+) True CI01000075_00001171_00013300
CI01000075_00093704_00094561.mRNA mRNA downstream 28264 93211 ~ 94652 (+) True CI01000075_00093704_00094561
CI01000075_00110314_00117133.mRNA mRNA downstream 45081 110028 ~ 117267 (+) True CI01000075_00110314_00117133
CI01000075_00190821_00197570.mRNA mRNA downstream 125619 190566 ~ 197909 (+) True CI01000075_00190821_00197570
CI01000075_00216589_00224690.mRNA mRNA downstream 151182 216129 ~ 224858 (+) True CI01000075_00216589_00224690
CI01000075_00252158_00255198.mRNA mRNA downstream 187211 252158 ~ 255206 (+) True CI01000075_00252158_00255198
TU327394 other downstream 170451 235398 ~ 237271 (+) True G288708
TU327465 other downstream 240161 305108 ~ 307921 (+) False G288755
TU327648 other downstream 852554 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other downstream 852967 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328138 other downstream 1263839 1328786 ~ 1363443 (+) True G289317

Expression Profile