RNA id: TU327394


Basic Information

Item Value
RNA id TU327394
length 589
RNA type TUCP
GC content 0.50
exon number 4
gene id G288708
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 235398 ~ 237271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACACGGATAAACCCCGAGAGCAGCAGAGCGCGAGCACGAGAGGGAGAGAGGGAGTGTTGCGGGCTTAATTCCACAAATTAACAAAATGCAAATAATTACATTATTCCCGTTTGTTTCTGCTGCATTATTGGCATTGGCAGCCAATGCAGAGGTGTACTTTAAAGAGCAGTTTCTGGATGGGGACGCCTGGAAGAGTCGATGGGTGAACTCGGAGCACAAGTCTGACTACGGGCAGTTTAAACTGACCGCTGGAAACTTCTACGGAGATGCCGAGAAAGACAAGGGGCTGCAGACCAGTCAGGATGCCCGTTTCTACGCCACCTCAGCCCGCTTCGACTCCTTTAGCAATGAGGACAAACCTCTGGTGGTCCAATTTACCGTCAAACACGAGCAGAAGATCGACTGCGGTGGTGGATATGTGAAAGTCTTCCCAGCTGATCTCAACCAGGCTGACATGCACGGAGACTCCCAGTATTACCTCATGTTCGGGCCTGATATCTGCGGCTACAGCACCAAGAAAGTTCACGTCATCTTCAACTACAAAGGCAAGAACCACCTCATCAAGAAAGAGATCAAATGCAAGGTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327377 lncRNA upstream 13543 149450 ~ 221855 (+) True G288694
TU327403 lncRNA upstream 62422 169869 ~ 172976 (+) True G288714
TU327374 lncRNA upstream 80278 152106 ~ 155120 (+) False G288693
TU327375 lncRNA upstream 80278 152106 ~ 155120 (+) False G288693
TU327376 lncRNA upstream 80278 152106 ~ 155120 (+) True G288693
TU327432 lncRNA downstream 1598 238869 ~ 239082 (+) True G288735
TU327400 lncRNA downstream 7631 244902 ~ 247066 (+) True G288711
TU327458 lncRNA downstream 66707 303978 ~ 304246 (+) True G288754
TU327460 lncRNA downstream 67837 305108 ~ 307921 (+) False G288755
TU327469 lncRNA downstream 67837 305108 ~ 316301 (+) False G288755
CI01000075_00216589_00224690.mRNA mRNA upstream 10540 216129 ~ 224858 (+) True CI01000075_00216589_00224690
CI01000075_00190821_00197570.mRNA mRNA upstream 37489 190566 ~ 197909 (+) True CI01000075_00190821_00197570
CI01000075_00110314_00117133.mRNA mRNA upstream 118131 110028 ~ 117267 (+) True CI01000075_00110314_00117133
CI01000075_00093704_00094561.mRNA mRNA upstream 140746 93211 ~ 94652 (+) True CI01000075_00093704_00094561
CI01000075_00015676_00016381.mRNA mRNA upstream 218969 15676 ~ 16429 (+) True CI01000075_00015676_00016381
CI01000075_00252158_00255198.mRNA mRNA downstream 14887 252158 ~ 255206 (+) True CI01000075_00252158_00255198
CI01000075_00257233_00263578.mRNA mRNA downstream 19962 257233 ~ 263956 (+) True CI01000075_00257233_00263578
CI01000075_00293769_00296813.mRNA mRNA downstream 56498 293769 ~ 297085 (+) True CI01000075_00293769_00296813
CI01000075_00500237_00500551.mRNA mRNA downstream 262438 499709 ~ 500672 (+) True CI01000075_00500237_00500551
CI01000075_00548373_00566336.mRNA mRNA downstream 311102 548373 ~ 566483 (+) True CI01000075_00548373_00566336
TU327465 other downstream 67837 305108 ~ 307921 (+) False G288755
TU327648 other downstream 680230 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other downstream 680643 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328138 other downstream 1091515 1328786 ~ 1363443 (+) True G289317
TU328137 other downstream 1116221 1353492 ~ 1363443 (+) False G289317

Expression Profile