RNA id: CI01000080_00319743_00328159.mRNA


Basic Information

Item Value
RNA id CI01000080_00319743_00328159.mRNA
length 2900
RNA type mRNA
GC content 0.43
exon number 18
gene id CI01000080_00319743_00328159
representative False

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 319743 ~ 328159 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGAATCTGATGACAGTGGACCTGTGATTGAAGGAGTGAGTGATGAAGACAGTGATGATGATAATTATGAGTTGGATCTCCCGCAAAATGTGGAGACTTGCCTGCAAATGAATTTGGTCTATCAGGAGGTTCTGAAAGAGAAACTATCTGAGCTGGAACAGCTCCTCAAAGAGAATCGACAGCAGCAGGTTAACAACAAACATCTGGGCTGTAGTTCATTGAAACAGAGTTTTCATGCCACTCAATTGCATGAGTTAAATTACACTATCACCATTTTAAAGCTGACTGTATCTCCACAGAAAGAGGTTGAGGCCCAGCTCTCTGGCCCAAGCACTTCTAGCTCCTCTGTACCAGGACTTCCCCCTCAGAAACTCTATCTTGGATACTTCATGAAGCCTTACTTCAAAGACAAACTCACCGGTCTGGGCCCTCCAGCAAATCCAGAAACTAAAGAGAGGCTGAGTCATGGTACCAGACCCATTGATGAGCTGAAAATAAGAAGATGGGAGGGTTGGCAGAAGACTTTGCTGACTAACGGAGTCGCCAAAGACATTCTGAAAAGGATGCTACAACCCAAACTATCCAACACCCTGAAAGATGATCAGCTGGTGGGCAATCGCCATGATGATCATGACTGGGAGAAAATATCAAATATTGACTTTGAAGGTTTGCGACAGGCTGAGGATTTGAAAAGGTTCTGGCAGAACTATTTGCACCCCTCCATTAACAAGTCTGTGTGGAAACAGGATGAGATCGATAAACTGAAAGGAATTGTAGAAGAATACAATTGCTGCCATTGGGACAAAATCGCAGAAGCTCTTGGGACGAACAGAACGGCTTTCATGTGCTTCCAGACTTACCAGCGCTACATTTCAAAGACCTTCAAAAGGAAAGAGTGGACACCGGAAGAAGACCAGGTCCTCAGAGACCTTGTTGAGAAAATGAGAATCGGCAACTTCATTCCTTACATACAAATGTCATACTTCATGCCGGGCCGTGATGGATCACAGCTGGCATATCGCTGGACGTCTGTTCTGGATCCCTCTATAAAGAAAGGTCCCTGGTCCAAAGAGGAGGACCAGTTATTACGGAACGCTGTCGCAAAATATGGCACCAAAGAATGGGGGAAAATCAGAATGGAAGTGCCAGGCAGGACTGACGGTGCTTGTCGTGACAGGTATGACTCATTTCAGATAAAGGAGAATGTGAAAAAGGGGCCTTGGAGCGAAGAGGAGGTAGAACTACTAAAAAAAATGGTTGAGAAATATGGTGTTGACCAAAATGTATCCATACTGTATCCTAATGACTCTATATTGTCTTTGTCTTTATCCATTGTGTATCATAATTTTCCAGGCAAGTGGAGTAAGATTGCCTCAGAGATCCCAAACCGGGTTGACTGCCAGTGCCTGAACAAGTGGAAATTACTGACAAAAGCTAGTCAAAATAAAGGCATAAAAAGAGAAATGAAGCCAACAACAATACAACAAAAAGCAAAAAGACGAAAAGTTTTGAGAAAAAAAATTAAAAAGGAGATGAGAACCTCCTCCAGCTCTGAGGATGAAAAAAAGATAAAGTATATGGACAGTGATGCTGAACCAGACGTGCCCTTAGTTGAAGCAATGGAAATAATACGAAAGGACTATGTACAGACAGATATGAAGAAATGGATACCTGCAAATGCAAACTTACTGGTTGTTTCTCAAGAAACTCTCAGGACAGTATGGGTCCGTCTTCCCACCAATGAGGAGGAGCTACAGTATGCCACTAAAGAATCTGAGTTGGGCCGCAATCGATCAGAGAAGAGCAAGTGTTCGAAAGTCAGGCCCGTTTTGGTGCACAACACCGTCCTGAACCGCTTCGGAAACATTGAAAGAACTTATGTGGGTATGAATCCTGTTGTCCTGCAAAGCCAGACTGACGATGAGAAGGCCATGATCAAGGTGTCAGAGAGTGATATTAGACTCTTCGTGCAGTGCAAGGGAACATCTGTAATAAAGAAAGTAAAAAGTCCAGCAAATAAAAAGAAAGTCCAGGAAAGTCAAGGAAATAATAAAAAAAGAAGGCCGGTTCAGGACATGGTCAGCCTTAAAAATGACCTCCTGAAAGCTATCACCCCATGGATTGGTAATGTGATCATGCCTCCCCCAGTGAAAGAAAATACACTTCGCGAAGGTGATATTGTTGGAATAAAAGCAGAAGACATCCCTCTTCCTAAGACATCAATGCTTGTATTTTTTATCAAAGCTTTTCACATAGATGTCATGGGTTGCAGAAATGTCATTGAAATTCAGCAAGAGAAAGGCATTAAGGAGCCTATTGCTGTATGTAACCCGACAACAGGTTATTTAGGTCCTCCTAAAACAGTGGCAGTGATGCTTCAGGAAGGAAAGAAGAAAGCTGAACACAAGAAACCTGCAGAACCTCCTCAACATCCACCTCCCCTGCAGCCAGTTCATCATCTTAACACTCCTCAGCTGCCAGTCAGGCAAATGATGCCCCCTGCTTTGATTCATCCCAACAATCTTGTCATTACACAGCCAAACATGCAGGAGGCAGTGAAACCTTTAATGCCTAAAGGACAGAAAGTATCACTACTACTACAGTCACCACCACAAGCTATGTCACCAATTCCTCTACCGGTAATACAAGGGACACCTCCAGCACAACCCATTACAACCTCAGTGTCCACATCACCAAGTGAAGAGGACTCAGACTGCGTCAGATCTATGAAACGCATCCGCAAACCTACTGAGAAAGTCCAAGCCCTAATGGAAGAATCAAAAGCTAAAAGTAGCAAAAAAGTGTCACAGAAACAAAAAAAGAGCAAACACGCTGTTTTTCCGACTGTTACATTGCAGACGCAGCCAGTAAACTGGATTCTTACCCCCACCAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329184 lncRNA downstream 21746 290561 ~ 297997 (-) True CI01000080_00292016_00307681
TU329243 lncRNA downstream 54295 264677 ~ 265448 (-) False G290258
TU329242 lncRNA downstream 54295 265067 ~ 265448 (-) True G290258
TU329236 lncRNA downstream 67810 251668 ~ 251933 (-) True G290252
TU329186 lncRNA downstream 120124 198709 ~ 199619 (-) True G290203
TU329355 lncRNA upstream 172230 500389 ~ 501638 (-) True G290360
TU329356 lncRNA upstream 173645 501804 ~ 502067 (-) True G290361
TU329357 lncRNA upstream 174167 502326 ~ 503408 (-) True G290362
TU329546 lncRNA upstream 240394 568553 ~ 568756 (-) True G290528
TU329547 lncRNA upstream 253300 581459 ~ 581692 (-) True G290529
CI01000080_00318151_00318865.mRNA mRNA downstream 878 317884 ~ 318865 (-) True CI01000080_00318151_00318865
CI01000080_00309567_00317169.mRNA mRNA downstream 2074 308046 ~ 317669 (-) True CI01000080_00309567_00317169
CI01000080_00292016_00307681.mRNA mRNA downstream 12062 291746 ~ 307681 (-) False CI01000080_00292016_00307681
CI01000080_00202124_00211154.mRNA mRNA downstream 108589 201941 ~ 211154 (-) True CI01000080_00202124_00211154
CI01000080_00118423_00142677.mRNA mRNA downstream 177066 118423 ~ 142677 (-) True CI01000080_00118423_00142677
CI01000080_00330537_00333221.mRNA mRNA upstream 2083 330242 ~ 333221 (-) True CI01000080_00330537_00333221
CI01000080_00521848_00524367.mRNA mRNA upstream 192922 521081 ~ 524390 (-) True CI01000080_00521848_00524367
CI01000080_00597523_00605227.mRNA mRNA upstream 269156 597315 ~ 606452 (-) True CI01000080_00597523_00605227
CI01000080_00614889_00638900.mRNA mRNA upstream 285703 613862 ~ 640684 (-) True CI01000080_00614889_00638900
CI01000080_00670914_00678760.mRNA mRNA upstream 342590 670749 ~ 678760 (-) True CI01000080_00670914_00678760
TU329180 other downstream 39896 272397 ~ 279847 (-) True G290197
TU329309 other upstream 79726 407885 ~ 408144 (-) True G290314
TU331407 other upstream 1307603 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 1307603 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 2189919 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 2405428 2733587 ~ 2743246 (-) True G292387

Expression Profile