RNA id: CI01000080_01993914_01996596.mRNA



Basic Information


Item Value
RNA id CI01000080_01993914_01996596.mRNA
length 1083
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000080_01993914_01996596
representative True

Chromosome Information


Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1993448 ~ 1996622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACACACCTGACTGACTGACACTGGACATGATGCAGTCCTCCTCTCCGACCGATCTTCGCAAGACGATCCCCGCAGCTGACGACTTCCTCATGTGGCGGGACTATATGAATCTTAGCAGGACTCTATCCCAACTGCTGGAGGAGCATCGCGACGAAAGGCAAGCCGTAACTGCGCGTGAGTGCCCCGCGGAGCGATTCATCAAGAGAACCGACTCTTCCAGCAGCACCTCCAGCACCAATGTCTCTTCCTCCAGCCGGGACCACCGCCGTGACACCTGCGGCTTCTGTCTGCAAAATGGAGAGAGTGAGGAGGTGTACATGAGTCATAGACTGAAAGCCCGAGACGGACGGATCCTCTGCCCGATCCTACGAAGTTATGTCTGTCCTTTCTGCTCTGCGACCGGAGACTGGGCGCACACGCGCCAATACTGTCCTCGGAGAGCATCGAAGACCAACAGAATAAGTGCACAAGGAGAGTATTTGCAGTTAACAGCAACTGAGCAGATGAAGGGGATCAGTCCAAGGCAGGTATTTGGAGACACACTCTTGGGAAATAGGAGACTGGAAAAGGAATCCGGAGGGAGTGGTAACGAGGAGAATAACACAGACATAACATAAATAGTACATTTGTATCACACAATGCTTTAGTGGGTTCTAGTCATAGACCAGACAATTACTGTGTGTGTGTGGCCTACATTTTCTTGATTATCCATAAAGATTTACTGGATCTGCACCATCCATAAGAAATTACAACTGAAAGCACCAGGAAAATGTACTCAAACCTCTGTTTTCTGCTCTATTATTGTGTCCTCGATACATGAATAGGCCTACATAAAAAATGATTTTCATTAAAACAATATACAGTAAATAGGCCTATACTTTTTAATTCCAAATCTATATTTGAATACACGAATACATCAGTAAAAAAAAAAAAAAATGGAACAGTTTATTGAACCTTTAGACAAAACATAAAAAGAAACTTTTTAAAAAAAATGTGCATGCTTTATGTTTTGTATCATAAAACATAAAGCACGCAAACTTTTTTAAGAGTTTCTTTTTATGTTTTGTCTAAAGGTTCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU331550 lncRNA downstream 454 1992714 ~ 1992994 (-) True G292197
TU331519 lncRNA downstream 11662 1979746 ~ 1981786 (-) True CI01000080_01980939_01981859
TU331518 lncRNA downstream 26882 1962538 ~ 1966566 (-) True G292176
TU331430 lncRNA downstream 180476 1812411 ~ 1812972 (-) True G292096
TU331436 lncRNA downstream 268423 1724695 ~ 1725025 (-) True G292102
TU331569 lncRNA upstream 93383 2090005 ~ 2090238 (-) True G292214
TU331602 lncRNA upstream 214221 2210843 ~ 2211065 (-) True G292242
TU331622 lncRNA upstream 266992 2263614 ~ 2266106 (-) True G292262
TU331709 lncRNA upstream 494492 2491114 ~ 2517180 (-) True G292339
TU331769 lncRNA upstream 736965 2733587 ~ 2736867 (-) False G292387
CI01000080_01987220_01990307.mRNA mRNA downstream 2751 1986498 ~ 1990697 (-) True CI01000080_01987220_01990307
CI01000080_01980939_01981859.mRNA mRNA downstream 11249 1980304 ~ 1982199 (-) False CI01000080_01980939_01981859
CI01000080_01954854_01959161.mRNA mRNA downstream 34124 1954691 ~ 1959324 (-) True CI01000080_01954854_01959161
CI01000080_01732531_01763618.mRNA mRNA downstream 229830 1732390 ~ 1763618 (-) True CI01000080_01732531_01763618
CI01000080_01726615_01730435.mRNA mRNA downstream 263013 1725989 ~ 1730435 (-) True CI01000080_01726615_01730435
CI01000080_02015292_02021186.mRNA mRNA upstream 17762 2014384 ~ 2021587 (-) True CI01000080_02015292_02021186
CI01000080_02057026_02085109.mRNA mRNA upstream 58773 2055395 ~ 2085109 (-) True CI01000080_02057026_02085109
CI01000080_02113135_02116388.mRNA mRNA upstream 116472 2113094 ~ 2116388 (-) True CI01000080_02113135_02116388
CI01000080_02117016_02119929.mRNA mRNA upstream 120164 2116786 ~ 2119929 (-) True CI01000080_02117016_02119929
CI01000080_02122386_02126617.mRNA mRNA upstream 125686 2122308 ~ 2127055 (-) True CI01000080_02122386_02126617
TU331407 other downstream 321528 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 330430 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 1585304 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1663931 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1713601 272397 ~ 279847 (-) True G290197
TU331720 other upstream 521456 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 736965 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1212363 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 1212612 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 1212612 3209234 ~ 3218403 (-) False G292516

Expression Profile