RNA id: CI01000080_02015292_02021186.mRNA


Basic Information

Item Value
RNA id CI01000080_02015292_02021186.mRNA
length 2641
RNA type mRNA
GC content 0.42
exon number 11
gene id CI01000080_02015292_02021186
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2014384 ~ 2021587 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCCCTAAGTCTAACTGGACTTATGATTTAAACCTTTATAATTTTTGAGATATAGCTCTTCTGTGAAAACCAGTCCCAGTCTTTTCTACATGTTAAGTATGCAAGCTTAGTACAGTAAGTATGTAGGCATCATAATATAAATTAGTTGTTACTGTGCAAATAGGCCTACCACGTTGTTGTATATTTCCCATCACAGTACCAATGTAAATATATATTTTGTTTCTAAATCTGTCTTCAATATTTACATAATATGCCGTCTATGTGTGGGCAGTCTTTAGATTTTAACATTTTGTTTGTTTGTTTCTAGGCAACATCGTAACAACACTACTAATAAGGAAGTAGAGTAGGAAGTGTTTAATAATCATTTCCGGGAAAGGTTCATGGTCAAATAGAATCCAACATGGCTGCTCACATGTCCAGATTGCGGGGCTGGAGCCGAGCTCAAAGGTATGGCATCGCAGTATGTAGACAGTACAGTAGTGGCAGCGCGTATCCCAGTGTGTCCCTGTCCACGCCGCTGCCCGGGATTCCCAAACCTGTCTTTGCTTCTGTGGACGGCCATGAGAAATACGAGACTAAAATTACCACCTTAGAAAACGGACTCAAAGTTGCGTCTCAGAACAAATTTGGTCAATTCTGTACAGTTGGAACCCAGTTTGGAAGTAAAGATGAAATTCTCCTAACACTTGAGAAACATGGAGGCATATGTGACTGCCAAACATCCAGGGACACAACAATGTATGCAGTTTCAGCTGAAGTGAAGGGTCTGGAAACTGTAGTGAACCTCCTGTCAGATGCAGTTCTGCAGCCCCGTTTATTAGATGAGGAGATTGAGATGACCAGAATGGCTGTTCGGTTTGAGTTGGAGGATCTGAACATGAGACCTGACCCAGAGCCTTTACTAACAGAAATGATTCATGCTGCAGCATACAGGGGCAACACCGTGGGCCTGCCTCGCTTCTGCCCTGCCAACAATGTTGAGAAGATCGACAGGAGGCTGCTTCATAAGTACCTACAGAGCTATTACTGCCCGGAGCGCATGGTGCTGGCCGGAGTTGGGATTGAACATGAGCAGCTTGTTCAGTGTGCCAGGAAGTATCTCCTAAATGTTAAACCTGTATGGGGCGTGAGCACACCTGCCAACGTCGACCTGTCTGTAGCACAATACACAGGCGGCATTGTTAAGATGGAGAAGGACATGTCTGATGAGGATGACTTCATCCCCTTTGCGGTCCTCAATATGATGATGGGAGGCGGAGGGTCTTTCTCTGCTGGAGGGCCAGGAAAAGGCATGTTCACCCGTCTCTACCTTAATGTGCTCAACAGGCATCACTGGATGTACAATGCTACTTCGTACCACCACAGCTATGAAGATAGTGGTCTGCTGTGCATCCATGCAAGTGCAGATCCTAGACAGATGGAGCTCGAGAGAGCCAAGACACAACTGAAATCCATGCTCATGATGAACCTGGAGTCTCGACCCGTCATCTTTGAAGATGTAGGTCGACAAGTACTTGCGACAGGCAAGAGGAAGCTGCCTCATGAGCTGTGTGACCTCATCAGTAATGTTACAGCCAGTGATATCAAGAGAGTTACAACGAAAATGCTGCGTAGCAAGCCTGCAGTAGCTGCGCTGGGAGATCTGACAGAGCTGCCCTCATATGAGGACATTCAGGCCGCTCTCTCTAGTAAAGATGGACGTCTGCCTCGCATATACCGCCTGTTCCGATAGGGGGCCAACGGCTGACACTATCTAGAGACAAATAGGAGAACTGACCCAACAAATATTCTTCTTCACTGGAATTTAAGTGCAATCCTTAGCAGGACTGTCTTTGCATTTCATCTGTATAGTGTTTAAAAGGTAACTTAGAGATAGTTACGCAGAAAATGGAAATTCTGTCATTTACTCACCATCATGTCATTCCAAAACTGTAGCCTTTCTTCTGCGGAACATAAAAGATAAATGTCTTAGTTTGCTGTCCATTGAATGTTTGGTTCCCAGCGTTTTTCAAAATATCTTTTCTGTTACGCAGAAGAAAGTGTCAAACAGATTTTGAATGACATAAGTAAACTACAGCATTTTCATTTTTGGGTGGAGAATTCCTTTAAATTTTAAATGCTGATGTGATGGCCGAGTACAGTTTCACATATCCACGTTTTTTGGCATGATTTTGTTGAACCCACCATGTTTAAAGTGAATTAATGTGCTCATTTTTCACATTTCCATCTTATTTGGCTTGACAAGTGGAGTTTCCCATGTCATTCAAGTCTGCGTTGCTGTTCATAGGCTGTGCTCTTCTGTGTAAAACTGGGCAAACCAGAAAGATATTTCTCATGTGACATAGCATTTTCCCACAAAGCTCTATAAAACACTCTTTTAGTTAAAGTGTTAGATATTAAAATATCCAATCAAAATGCAGTGAAAACAGAACCATCAACCAATGATTTTAAGTGTATATAATCCCTACTTCTGTTGCTAAATCACTGTTCACAATTCCTCCCCAGAATTACTGTCAGTATCCCTTTATGTTGGTTTACCCTAAAATAACATATTTATTCCCTTGCACTTCCATTTACGGTTAGATTTTTACATTAAGATGATGGGAATAGGTAAATCTGTTGTCCCTTGGAAAAAATAAA

Function

GO:

id name namespace
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01412 PMPCA, MAS2; mitochondrial-processing peptidase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331550 lncRNA downstream 21390 1992714 ~ 1992994 (-) True G292197
TU331519 lncRNA downstream 32598 1979746 ~ 1981786 (-) True CI01000080_01980939_01981859
TU331518 lncRNA downstream 47818 1962538 ~ 1966566 (-) True G292176
TU331430 lncRNA downstream 201412 1812411 ~ 1812972 (-) True G292096
TU331436 lncRNA downstream 289359 1724695 ~ 1725025 (-) True G292102
TU331569 lncRNA upstream 68418 2090005 ~ 2090238 (-) True G292214
TU331602 lncRNA upstream 189256 2210843 ~ 2211065 (-) True G292242
TU331622 lncRNA upstream 242027 2263614 ~ 2266106 (-) True G292262
TU331709 lncRNA upstream 469527 2491114 ~ 2517180 (-) True G292339
TU331769 lncRNA upstream 712000 2733587 ~ 2736867 (-) False G292387
CI01000080_01993914_01996596.mRNA mRNA downstream 17762 1993448 ~ 1996622 (-) True CI01000080_01993914_01996596
CI01000080_01987220_01990307.mRNA mRNA downstream 23687 1986498 ~ 1990697 (-) True CI01000080_01987220_01990307
CI01000080_01980939_01981859.mRNA mRNA downstream 32185 1980304 ~ 1982199 (-) False CI01000080_01980939_01981859
CI01000080_01954854_01959161.mRNA mRNA downstream 55060 1954691 ~ 1959324 (-) True CI01000080_01954854_01959161
CI01000080_01732531_01763618.mRNA mRNA downstream 250766 1732390 ~ 1763618 (-) True CI01000080_01732531_01763618
CI01000080_02057026_02085109.mRNA mRNA upstream 33808 2055395 ~ 2085109 (-) True CI01000080_02057026_02085109
CI01000080_02113135_02116388.mRNA mRNA upstream 91507 2113094 ~ 2116388 (-) True CI01000080_02113135_02116388
CI01000080_02117016_02119929.mRNA mRNA upstream 95199 2116786 ~ 2119929 (-) True CI01000080_02117016_02119929
CI01000080_02122386_02126617.mRNA mRNA upstream 100721 2122308 ~ 2127055 (-) True CI01000080_02122386_02126617
CI01000080_02173438_02187618.mRNA mRNA upstream 151766 2173353 ~ 2188990 (-) True CI01000080_02173438_02187618
TU331407 other downstream 342464 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 351366 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 1606240 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1684867 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1734537 272397 ~ 279847 (-) True G290197
TU331720 other upstream 496491 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 712000 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1187398 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 1187647 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 1187647 3209234 ~ 3218403 (-) False G292516

Expression Profile