RNA id: CI01000080_03207204_03212602.mRNA


Basic Information

Item Value
RNA id CI01000080_03207204_03212602.mRNA
length 606
RNA type mRNA
GC content 0.49
exon number 5
gene id CI01000080_03207204_03212602
representative False

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3207204 ~ 3212913 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATCTGAAGCTGCACCCACAGAAGAAGCCCCTGCCCAAGAAGCAATTGCTGAAGTTGTAGAAACAGTCAATGAAGTAGTTGCAGAAGCTGCCCCTATTGAGCCAGTTGCAGAGGCAGCTCCTGCTGAAGAGCTGGTAGATTCTGCCCCTGTGATCACAGATGCTACTGAAGTTCCAGCAGAAGTTGTGGAGACGCCTGAGGCTGGATTGGACCCCATTCAGAAACTTTTCCTAGATTCAATTCGTGCATACTCCACAAAAAGCGGTGCCGCTGGTGGTCTAGTTGATGCCGGTCCAGAGTATCAGAAGGCTCTTGCTGAGGAAATAGCCAAACTGCAGCGGTTGTATGGTGGTGGTGATCTGACTTCCTTCCCAGAATTCAAATTCCCAGAAACTATCGATGACGACCGAATCGTGAGTTTCATTTTCCACACGGACAATAATAACAGGAGAACAAAGATGGCGACGTCCCTGCTCAGGTTAGGTCGACTTGGATCTGTCAAGTGTCTCCTGCGTGAAGGCTGGACACCTAGGACCCCATTTGTTGCAGCACTGTGCACTAAAGGGGATGTCACACCCAAAACAGCAAAAAAGTCAAAGGCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332005 lncRNA downstream 30031 3176588 ~ 3177173 (-) True G292567
TU332004 lncRNA downstream 30169 3176550 ~ 3177035 (-) False G292567
TU332002 lncRNA downstream 32946 3173977 ~ 3174258 (-) True G292565
TU332000 lncRNA downstream 34651 3172287 ~ 3172553 (-) True G292563
TU331999 lncRNA downstream 34999 3171998 ~ 3172205 (-) True G292562
TU332032 lncRNA upstream 128469 3341071 ~ 3373532 (-) False G292590
TU332033 lncRNA upstream 128469 3341071 ~ 3380066 (-) False G292590
TU332034 lncRNA upstream 161688 3374290 ~ 3380066 (-) True G292590
TU332042 lncRNA upstream 171111 3383713 ~ 3386192 (-) True G292596
TU332052 lncRNA upstream 179185 3391787 ~ 3423582 (-) True G292606
CI01000080_03199317_03204484.mRNA mRNA downstream 2720 3199200 ~ 3204484 (-) True CI01000080_03199317_03204484
CI01000080_03187019_03196643.mRNA mRNA downstream 10561 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
CI01000080_03135523_03147452.mRNA mRNA downstream 59752 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_02998252_03001018.mRNA mRNA downstream 205531 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_02901179_02916041.mRNA mRNA downstream 289561 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_03225699_03250598.mRNA mRNA upstream 12965 3225567 ~ 3251467 (-) True CI01000080_03225699_03250598
CI01000080_03259702_03274657.mRNA mRNA upstream 46771 3259373 ~ 3274657 (-) True CI01000080_03259702_03274657
CI01000080_03309401_03310494.mRNA mRNA upstream 96735 3309337 ~ 3310494 (-) True CI01000080_03309401_03310494
CI01000080_03390711_03395563.mRNA mRNA upstream 178025 3390627 ~ 3395563 (-) True CI01000080_03390711_03395563
CI01000080_03421006_03421194.mRNA mRNA upstream 208173 3420775 ~ 3421194 (-) True CI01000080_03421006_03421194
TU331774 other downstream 463958 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 681795 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1535284 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1544186 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2799060 407885 ~ 408144 (-) True G290314
TU332208 other upstream 502879 3715481 ~ 3728010 (-) True G292714

Expression Profile