RNA id: CI01000080_03309401_03310494.mRNA


Basic Information

Item Value
RNA id CI01000080_03309401_03310494.mRNA
length 1158
RNA type mRNA
GC content 0.48
exon number 1
gene id CI01000080_03309401_03310494
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3309337 ~ 3310494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATGGATACAAACCACACATATGGATCTACCCCTGCAGATGGGAACAGCAAAAACACATGGGACATGATTCTTCTCTCCCTCACGCTTTCGTTTCTGGCCATACTGACTACGGCGATGAACTGCTTGGTCATCACAGCCATCATCGTCACACGCAAGCTGCACCACCCCGCAAACTATCTCATCTGCTCTTTAGCTGTGACAGACCTTTTGGTGGCCATTTTAGTCATGCCCTTTAGCATTGTCTACATAGTAAAGGAGACGTGGGAAATCGGTCAAGTCATGTGCAACATCTGGTTAAGCGTGGACATAACCTGCTGCACATGCTCCATTCTGCACCTGGCAGCCATCGCTGTGGACCGTTACCGCTCCATCACAGACGCCGTGGAGTACTCGAGAAAGAGGACATCTCTACGGGCCGCCATCATGATCAGCATAGTGTGGCTCCTCGCTATAGTCGTCTCTCTGCCGCCAATGCTGTTGAGACAACAAGACGAGGAAAATCACTGCATCATTAAGCACGACATCGTCTTTACGATTTACTCCACATTTGGGGCTTTTTACATCCCGCTAACACTCATTCTCATTCTCTACTACAAGATCTACCAAGCAGCAAAGACTCTTTACCAAAGGAGAGAGGCCAGTTGCCTCAAGCCAGAGATGAACGGACAAACGCTTCCCAAGTGCAGCGACAGGGAGCCGACAACCCCGGACACCCTGAGCCCTCCAGAGAAATCAGTGTCTGAACCCTCCACCGAAGGTGACAGAGTGCGCATTGCCACAAAAAGTCCAAAGTCTCAGTCTTGCAGACAGCGGTCTGTCAGGAGGCATCGCATCTCGAGTACGCGTGAAAAGAAGGCCGCCACCACTCTCGGACTCATTCTAGGGGCTTTTGTCATCTGCTGGCTGCCGTTCTTTATCCATGAGGTGATTGTTAATGTCTGTAAGTCCTGCGCTCGCTCTCTTGAAATGACCAACTTTCTGACTTGGCTGGGATATCTGAACTCTCTCATCAACCCCCTGATTTACACCATCTTTAATGAAGATTTCAAAAGGGCTTTTCAGAAGTTAATCAAGTGCAAGAATTGTTTCTAACACCAATGAAGGATTTACGTCAAGTGAGCTCAAACTATTACACTCAAAAAATAACTGAATTAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331949 lncRNA downstream 91179 3208855 ~ 3218158 (-) False G292516
TU331948 lncRNA downstream 91179 3209234 ~ 3218158 (-) False G292516
TU331950 lncRNA downstream 96424 3209234 ~ 3209562 (-) True G292516
TU332005 lncRNA downstream 132164 3176588 ~ 3177173 (-) True G292567
TU332004 lncRNA downstream 132302 3176550 ~ 3177035 (-) False G292567
TU332032 lncRNA upstream 30577 3341071 ~ 3373532 (-) False G292590
TU332033 lncRNA upstream 30577 3341071 ~ 3380066 (-) False G292590
TU332034 lncRNA upstream 63796 3374290 ~ 3380066 (-) True G292590
TU332042 lncRNA upstream 73219 3383713 ~ 3386192 (-) True G292596
TU332052 lncRNA upstream 81293 3391787 ~ 3423582 (-) True G292606
CI01000080_03259702_03274657.mRNA mRNA downstream 34680 3259373 ~ 3274657 (-) True CI01000080_03259702_03274657
CI01000080_03225699_03250598.mRNA mRNA downstream 57870 3225567 ~ 3251467 (-) True CI01000080_03225699_03250598
CI01000080_03207204_03212602.mRNA mRNA downstream 96735 3207204 ~ 3212602 (-) False CI01000080_03207204_03212602
CI01000080_03199317_03204484.mRNA mRNA downstream 104853 3199200 ~ 3204484 (-) True CI01000080_03199317_03204484
CI01000080_03187019_03196643.mRNA mRNA downstream 112694 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
CI01000080_03390711_03395563.mRNA mRNA upstream 80133 3390627 ~ 3395563 (-) True CI01000080_03390711_03395563
CI01000080_03421006_03421194.mRNA mRNA upstream 110281 3420775 ~ 3421194 (-) True CI01000080_03421006_03421194
CI01000080_03460127_03482686.mRNA mRNA upstream 149633 3460127 ~ 3482686 (-) True CI01000080_03460127_03482686
CI01000080_03546606_03550758.mRNA mRNA upstream 235797 3546291 ~ 3550966 (-) False CI01000080_03546606_03550758
CI01000080_03599356_03610857.mRNA mRNA upstream 288629 3599123 ~ 3610942 (-) True CI01000080_03599356_03610857
TU331947 other downstream 90934 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 91179 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 91179 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 566091 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 783928 2518078 ~ 2525409 (-) True G292349
TU332208 other upstream 404987 3715481 ~ 3728010 (-) True G292714

Expression Profile