RNA id: CI01000080_03871122_03871424.mRNA


Basic Information

Item Value
RNA id CI01000080_03871122_03871424.mRNA
length 1069
RNA type mRNA
GC content 0.49
exon number 1
gene id CI01000080_03871122_03871424
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3870817 ~ 3871885 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGGCGGGTGTTCTTTGTGTGCTCTGGGATGACTTACCACACAGGATGTGGCGGAGAATGGAAAGGACAACACTGCACTCTTTCATGTCCCATTTCTGCAGTCTGGAACGTGGCGGCTTCTTAATTCTGTGCGTATGCAGGCCTGACACTGATCACAGATTAATATGAGCAATGACCGCGTTGCTGTTTCTCTGTTGTTAAGCAGCACCGTGAGAGCTATGAATATGTAATCTTACAGGCTAAAAGGACAATGAAAATTTCCATGGGATTCAAACTCCCATGAGCAAGGCTCTGCGGTGATGCTAATATTTCAAATCGAACTTCCTGCCTCTCCTTGAGTGCTGAAATATGGTGAAGTTTATGCAAAAAAAAGCAGTCGGCCTGAGACACTTGAACATAGCCACATGGAGTCTGCAGCCAGAAAAAAACATCCTCACGGTGACTCCACAGTCTGCGAAACATGGGAAGGATTCTGGCTTGGTGCTCTTGCTCATCCTGTGTGTACAGTACCACGCTTACAGGAGAGCTAATAATAAGCTCCCGGGGCCTGCTCAGCACTGAGGAAAGTGCCTGCCAGTGGTTTCGGCTGCTTTGCTCTCAACACTGCCTGGTTTTGGCCGTCTGTCATATTCTGATGGAGTGCTGGGTTCGGCGTATTCAACTACCTTCTGGCTTGGGCAAGAACAGCTCACATGGCAAAACAAAAGGGTATAAATACCACCCAAACCTTCCTGCCGCAGCGCCTGCATTCTGTGGAAAATAGCTGAAGGCACGAGAAACCCACGGCAAAACAAGGGTTCTCACGGTATATTAATGACTCTCGAGCGAACGTGGCGTGCTGCGGGATGGCGGTCCCTGCGAGGGCAGCCAAGTTCATAAGGTTATGGAATGTGCTCGAGCTTTTCTGGCCTTGCCCTAATTTCGGAAGGGGAATGCAGGTGACCTGATCGTCATCCGCAGGAATGCGGATTGCCAAAACACTGCGAACTGACACGAGTTATGCAGAAGTCACACAAACTCCAGCGTGGTGTATTTGCAACCAAAGTAATAATTGTGGTTCTGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332344 lncRNA downstream 1304 3869307 ~ 3869513 (-) True G292843
TU332334 lncRNA downstream 32639 3837979 ~ 3838178 (-) True G292833
TU332326 lncRNA downstream 43647 3826939 ~ 3827170 (-) True CI01000080_03823638_03839211
TU332321 lncRNA downstream 46904 3823678 ~ 3823913 (-) False CI01000080_03823638_03839211
TU332220 lncRNA downstream 107700 3762147 ~ 3763117 (-) True G292726
TU332364 lncRNA upstream 150010 4021895 ~ 4022370 (-) True G292863
TU332374 lncRNA upstream 154475 4026360 ~ 4028482 (-) True G292868
TU332414 lncRNA upstream 265745 4137630 ~ 4140895 (-) True G292905
TU332416 lncRNA upstream 269188 4141073 ~ 4141365 (-) True G292907
TU332415 lncRNA upstream 269729 4141614 ~ 4142126 (-) True G292906
CI01000080_03858298_03868014.mRNA mRNA downstream 2538 3857803 ~ 3868279 (-) True CI01000080_03858298_03868014
CI01000080_03823638_03839211.mRNA mRNA downstream 31361 3823433 ~ 3839456 (-) False CI01000080_03823638_03839211
CI01000080_03768413_03792359.mRNA mRNA downstream 78405 3768183 ~ 3792412 (-) True CI01000080_03768413_03792359
CI01000080_03599356_03610857.mRNA mRNA downstream 259875 3599123 ~ 3610942 (-) True CI01000080_03599356_03610857
CI01000080_03546606_03550758.mRNA mRNA downstream 319851 3546291 ~ 3550966 (-) False CI01000080_03546606_03550758
CI01000080_03882251_03905283.mRNA mRNA upstream 10330 3882215 ~ 3905283 (-) True CI01000080_03882251_03905283
CI01000080_03925953_03961599.mRNA mRNA upstream 53645 3925530 ~ 3961817 (-) True CI01000080_03925953_03961599
CI01000080_03972165_03981008.mRNA mRNA upstream 100246 3972131 ~ 3982765 (-) True CI01000080_03972165_03981008
CI01000080_04006295_04009794.mRNA mRNA upstream 134296 4006181 ~ 4009794 (-) True CI01000080_04006295_04009794
CI01000080_04185680_04192219.mRNA mRNA upstream 313261 4185146 ~ 4192219 (-) True CI01000080_04185680_04192219
TU332208 other downstream 142807 3715481 ~ 3728010 (-) True G292714
TU331947 other downstream 652414 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 652659 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 652659 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 1127571 2733587 ~ 2743246 (-) True G292387

Expression Profile