RNA id: CI01000080_03972165_03981008.mRNA


Basic Information

Item Value
RNA id CI01000080_03972165_03981008.mRNA
length 2241
RNA type mRNA
GC content 0.36
exon number 5
gene id CI01000080_03972165_03981008
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3972131 ~ 3982765 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTATCTTGTTTTGTCCATCATCTTGTTTGAATTTGGCCAAAAAGTTATCTTAGAAGATTGCATAATCATACTACTTACATTGAAAACACATCTACAGTGCCTTCAAATACTGCTTATGTACCCAGCAAACTGCTAAGGCAGAATCATAACCATCATGGAACCTCATAAGTGACTGAATTGATACTGTCTACACAGGCAGCAACTCATTATAATGGCCACACACACACCCCACAAAATGTTTTGCTTTGAACTTTTATTGGCCTTAAGCGAAACTCCCAAATGCGCAAATTTCTATTAAAATCACGTCTGAGAAATTTCGCAAAGCAACAGTAAATGTGACCACTAGTGTTGTTTTACTGGAGAGACCGGTCTTAAGACCATTTTTTGAAGGTCTTGTTCTTATCTTGGTTTCGACTGCATTTGTTTTTGGTCTTGTCTTGGTCTCAGACTATGAGGACTCTGGATTTTATTTCAAGACCGGTCAAGACCACGGTTCTGAGGATATCGTTAAATTGTCAGTGCATTGTCTGATTTATTACCATAACTAATGTGATTGGATGTAAAACTTCTTTCTTCAGATGCAATCAATAATTATTTCGAATTTGATGTATTTATACTGTTGTGCTGGTTCAGAAATTAATGAGGGAATAATACAAATGGCCATAAAATTTGAAGATATTATTGCAAAAATGTACTTGTAAGAGATATGGATTTTTATATTACAAAATATGATATAATTTTATATATATATATATATATATATATATATATATAACGAGAGCAGGAGATCTGTTTTCACAAATTTGAGCACAATTGCAAACGTGATATCGATTTTATACAAATGTTCAATAAACAAAACACAAAGCATTGTTTAGGCATTTGTAATTTTACCAATTCAGATGCAACTTCTGTGCCACCTCTAGTGTAACAATGATTTTTTTATTTTTTTTTTTTTGGTTAGTGATTTCATTTGATTGTATACAGCTCTATATAGTGTCCTATTATTCTAATTGTATTTATTGATTAAAAATAATAAATTTCTCAGGCAGTAAATGTGGATCTTTCAGATTAATTTGAGTGCTGATCTGGTCTTGGTCTTGACTCGGTCTCGCCTTGCCTTGGTCTTGGTCTTGTCTTGGTCTCAACATACACTGGTCTTGGTCTTGGATTAGGTGGTCTTGACTACAATACTAATGACCACACCTTCACACTAAAGGCCTATTGACACCAAGAAAGATAACTATAAAGAAAACTATAATGGTATATAACTATAACTATATTAGCATCCACATAAATGCACAATAACTTTCTGTTTATTATTAGTGCGCACAAAGTCTGCCGCTTAAAATGCTTGAGCTCTTTATAGTTGGGTGAAATCTGATTGGCTGTCAATGTTTTTATTGTTCATCAGCTGAAAAAAAAATTGCTCTGAAAGTGATTCCAATGATATACTTTAGTTCCTCTGTGTCATTTTAGTTAGTTGTGGTGTTGATGTCCCTATTCCCATAGAGTTAGGACAATTATTTAACCTTAGTCATTGTTATAGATAAAGCTTTGTGTGAACGGGCCTTTACAATTGTTTTAAATAGTTTGGTGCTAGCATGTTGCTAAGCTAACAGCATGATAGCACAAAAATTGCATAAACACAAATATTTAGAGAAGTAGTCCAATTTAATTAGATGGTAGATCCAGTTTAATTTATCAACACGTAGAATTTAGCCTAAATATGGTGTCTTAGCTTTGGAACAATAAAAAATGTCTACGTTTTGGAACAGAGCTAATCTGTTTATCACTACTGGACCGACGAGTGTGAAGGAAGGGCTACTTCTGAAACAGACAAGCTCGTTCCAGCGTTGGAAAAAACGTTATTTCAAATTGCGGGGACGTACTCTCTACTATGCCAAGGATGCCAAGGCGGGTGGCGTTTTGGCCCGCTGGCAGTATCGAGTCTCTCGTAGCCGCGTGTGCTGGAGGGTGCTTTCCGTCTGCTGGACCGGTGCCCGCCGTCCGCCGCCCGTTCTTGGCGCCAGTGGATCGGAGGAAGGCTTGGTGGCGATTCGGTCTCTTATTTTCGATGAAGTGGATCTTTCAGATGCCAGTGTTGCCGAATCAAGCACAAAGAATGTCAACAACAGTTTCACGAAAAAAGAAATCGCCCACTGCCAGGAAAAACAACAGATGCTCATTATACTTATAAATTATTGAGAGGCCCATGTTGAAGCTTTTTTTTAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332344 lncRNA downstream 102618 3869307 ~ 3869513 (-) True G292843
TU332334 lncRNA downstream 133953 3837979 ~ 3838178 (-) True G292833
TU332326 lncRNA downstream 144961 3826939 ~ 3827170 (-) True CI01000080_03823638_03839211
TU332321 lncRNA downstream 148218 3823678 ~ 3823913 (-) False CI01000080_03823638_03839211
TU332220 lncRNA downstream 209014 3762147 ~ 3763117 (-) True G292726
TU332364 lncRNA upstream 39130 4021895 ~ 4022370 (-) True G292863
TU332374 lncRNA upstream 43595 4026360 ~ 4028482 (-) True G292868
TU332414 lncRNA upstream 154865 4137630 ~ 4140895 (-) True G292905
TU332416 lncRNA upstream 158308 4141073 ~ 4141365 (-) True G292907
TU332415 lncRNA upstream 158849 4141614 ~ 4142126 (-) True G292906
CI01000080_03925953_03961599.mRNA mRNA downstream 10314 3925530 ~ 3961817 (-) True CI01000080_03925953_03961599
CI01000080_03882251_03905283.mRNA mRNA downstream 66848 3882215 ~ 3905283 (-) True CI01000080_03882251_03905283
CI01000080_03871122_03871424.mRNA mRNA downstream 100246 3870817 ~ 3871885 (-) True CI01000080_03871122_03871424
CI01000080_03858298_03868014.mRNA mRNA downstream 103852 3857803 ~ 3868279 (-) True CI01000080_03858298_03868014
CI01000080_03823638_03839211.mRNA mRNA downstream 132675 3823433 ~ 3839456 (-) False CI01000080_03823638_03839211
CI01000080_04006295_04009794.mRNA mRNA upstream 23416 4006181 ~ 4009794 (-) True CI01000080_04006295_04009794
CI01000080_04185680_04192219.mRNA mRNA upstream 202381 4185146 ~ 4192219 (-) True CI01000080_04185680_04192219
CI01000080_04196209_04198578.mRNA mRNA upstream 212297 4195062 ~ 4198578 (-) True CI01000080_04196209_04198578
CI01000080_04199562_04201445.mRNA mRNA upstream 216502 4199267 ~ 4201597 (-) True CI01000080_04199562_04201445
CI01000080_04226079_04237658.mRNA mRNA upstream 243263 4226028 ~ 4237658 (-) True CI01000080_04226079_04237658
TU332208 other downstream 244121 3715481 ~ 3728010 (-) True G292714
TU331947 other downstream 753728 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 753973 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 753973 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 1228885 2733587 ~ 2743246 (-) True G292387

Expression Profile