RNA id: TU329188


Basic Information

Item Value
RNA id TU329188
length 904
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G290205
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 164571 ~ 165474 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTCTAGGGTAGTGCCTTTATTTAAATAATTACATCCATATCTTTAAAAACATTAAAATCAGATCTTTAAAAGGTTATTTACAAGAAAAATAGAGTGCAATTATTTAAGCAACTGTAGTAATAATAGTAAGCTCTTTGTGATGCAAACTGTTTCAAGTACACTATCTGAGTAGCCTTGACTAAGGGGGCGTTTACACGACACCATTTTCAACTAAAAATGGAAAACTTTTTATGTTTTTAGGGGCCTGAAAACGCAAACATTTGAAAACGGGTTTCAAAGTGCAAGTTTTTGAAAACTATACTGTTAACATGTCCATGTAAATGACAAAAACGCAAATTTGTAAAAACTGTGATGTCATGCGCATTATGTGTTCAGTCTATAGTCATGTGGTATTTCTTTACAAAGTGACATCGCCAACTACTGGCCTGGCATGAATAATACAGCGTTTTTAGTCGTCTTCGCAGATGAACACGGATTGTTTTGACAACGTTGTCGTCTGTGCGCAACAAACGCAAAGGAAAAACTTTTCCGTTTTTAGTACATTGTTGTCGTCTGAACGTACCCTTATGCAGACCACATTGTTCTTTTGTTCAGAATAGAAGCATGAATCGTCTGCGCTGATCATGGACACTTCTAAATCGAATGGTCAATCCAACCCTAATAGCCATTCCTCAATGTCTCTCTCATAGGACTTGGCATCTTTTTGCCAGTCAATATGCCATCGCAGGTTGGCTATGACCTGAGTGTAACTGTCCCCTAGACTTTTCTTCCATTGCAGAAACTGTTGCTTATTGTAGCGGTGAACACTTTGGGAGACACTGGGGTAGTCCAAAATTCTGCGTAACTGCTTGTCCAAGTCCTGACATACATCAGGAAAATGTGATGCAACATTTCTCAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329207 lncRNA downstream 177 164182 ~ 164394 (-) True G290223
TU329208 lncRNA downstream 695 163668 ~ 163876 (-) True G290224
TU329206 lncRNA downstream 2639 161357 ~ 161932 (-) False G290222
TU329205 lncRNA downstream 2639 161673 ~ 161932 (-) True G290222
TU329185 lncRNA downstream 3706 160524 ~ 160865 (-) True G290202
TU329186 lncRNA upstream 33235 198709 ~ 199619 (-) True G290203
TU329236 lncRNA upstream 86194 251668 ~ 251933 (-) True G290252
TU329243 lncRNA upstream 99203 264677 ~ 265448 (-) False G290258
TU329242 lncRNA upstream 99593 265067 ~ 265448 (-) True G290258
TU329184 lncRNA upstream 125087 290561 ~ 297997 (-) True CI01000080_00292016_00307681
CI01000080_00118423_00142677.mRNA mRNA downstream 21894 118423 ~ 142677 (-) True CI01000080_00118423_00142677
CI01000080_00103467_00104168.mRNA mRNA downstream 60383 103316 ~ 104188 (-) True CI01000080_00103467_00104168
CI01000080_00000621_00005854.mRNA mRNA downstream 158717 547 ~ 5854 (-) True CI01000080_00000621_00005854
CI01000080_00202124_00211154.mRNA mRNA upstream 36467 201941 ~ 211154 (-) True CI01000080_00202124_00211154
CI01000080_00292016_00307681.mRNA mRNA upstream 126272 291746 ~ 307681 (-) False CI01000080_00292016_00307681
CI01000080_00309567_00317169.mRNA mRNA upstream 142572 308046 ~ 317669 (-) True CI01000080_00309567_00317169
CI01000080_00318151_00318865.mRNA mRNA upstream 152410 317884 ~ 318865 (-) True CI01000080_00318151_00318865
CI01000080_00319743_00328159.mRNA mRNA upstream 154269 319743 ~ 328159 (-) False CI01000080_00319743_00328159
TU329180 other upstream 106923 272397 ~ 279847 (-) True G290197
TU329248 other upstream 161319 327689 ~ 329517 (-) True G290261
TU329309 other upstream 242411 407885 ~ 408144 (-) True G290314
TU331407 other upstream 1470288 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 1470288 1635762 ~ 1663018 (-) False G292089

Expression Profile