Item | Value |
---|---|
RNA id | TU329180 |
length | 7451 |
RNA type | TUCP |
GC content | 0.39 |
exon number | 1 |
gene id | G290197 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000080 |
NCBI id | null |
chromosome length | 5175454 |
location | 272397 ~ 279847 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU329243 | lncRNA | downstream | 6949 | 264677 ~ 265448 (-) | False | G290258 |
TU329242 | lncRNA | downstream | 6949 | 265067 ~ 265448 (-) | True | G290258 |
TU329236 | lncRNA | downstream | 20464 | 251668 ~ 251933 (-) | True | G290252 |
TU329186 | lncRNA | downstream | 72778 | 198709 ~ 199619 (-) | True | G290203 |
TU329188 | lncRNA | downstream | 106923 | 164571 ~ 165474 (-) | True | G290205 |
TU329184 | lncRNA | upstream | 10714 | 290561 ~ 297997 (-) | True | CI01000080_00292016_00307681 |
TU329355 | lncRNA | upstream | 220542 | 500389 ~ 501638 (-) | True | G290360 |
TU329356 | lncRNA | upstream | 221957 | 501804 ~ 502067 (-) | True | G290361 |
TU329357 | lncRNA | upstream | 222479 | 502326 ~ 503408 (-) | True | G290362 |
TU329546 | lncRNA | upstream | 288706 | 568553 ~ 568756 (-) | True | G290528 |
CI01000080_00202124_00211154.mRNA | mRNA | downstream | 61243 | 201941 ~ 211154 (-) | True | CI01000080_00202124_00211154 |
CI01000080_00118423_00142677.mRNA | mRNA | downstream | 129720 | 118423 ~ 142677 (-) | True | CI01000080_00118423_00142677 |
CI01000080_00103467_00104168.mRNA | mRNA | downstream | 168209 | 103316 ~ 104188 (-) | True | CI01000080_00103467_00104168 |
CI01000080_00000621_00005854.mRNA | mRNA | downstream | 266543 | 547 ~ 5854 (-) | True | CI01000080_00000621_00005854 |
CI01000080_00292016_00307681.mRNA | mRNA | upstream | 11899 | 291746 ~ 307681 (-) | False | CI01000080_00292016_00307681 |
CI01000080_00309567_00317169.mRNA | mRNA | upstream | 28199 | 308046 ~ 317669 (-) | True | CI01000080_00309567_00317169 |
CI01000080_00318151_00318865.mRNA | mRNA | upstream | 38037 | 317884 ~ 318865 (-) | True | CI01000080_00318151_00318865 |
CI01000080_00319743_00328159.mRNA | mRNA | upstream | 39896 | 319743 ~ 328159 (-) | False | CI01000080_00319743_00328159 |
CI01000080_00328119_00328700.mRNA | mRNA | upstream | 48272 | 328119 ~ 328700 (-) | False | CI01000080_00328119_00328700 |
TU329248 | other | upstream | 46946 | 327689 ~ 329517 (-) | True | G290261 |
TU329309 | other | upstream | 128038 | 407885 ~ 408144 (-) | True | G290314 |
TU331407 | other | upstream | 1355915 | 1635762 ~ 1671920 (-) | False | G292089 |
TU331420 | other | upstream | 1355915 | 1635762 ~ 1663018 (-) | False | G292089 |
TU331720 | other | upstream | 2238231 | 2518078 ~ 2525409 (-) | True | G292349 |