RNA id: TU329180



Basic Information


Item Value
RNA id TU329180
length 7451
RNA type TUCP
GC content 0.39
exon number 1
gene id G290197
representative True

Chromosome Information


Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 272397 ~ 279847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGACAAATCACAGTTCAGGGAAATGTTTTCACAGGGCAATCACAGAGATAAAAGAAAAAAGTCATTCTTTTTGCATTTTAATATTGATGTGAAAAGTAAAATCTTAAGCTACATAAACTGCTCTGCTAACAGAATGGAATGCTAAATAAACAACCTTCAACAAACCTATAGCATTACACATTCGCGACCATTTGCTATGAAAATGATCAAATGGATCCAGTTACAAAATATATTGCTTTGAGATTCACAAAAGACTAATATAATTTCCTTGGCAATAAAACAAGAGCAGTTGTGGCAGATTCTCTATAATTTGGGACACTGCAGTCACAAAACTTGTCACAAATCCACCTTTGAAAGGTACACTATATGTAATGGAAGCACATACTGCACATTGGAAAAAAATTCACACAAAACACTTGCCCGTTGACTCTGAAAATGAGGAACAATATTTAATTTAGCATCCTATCCAGAACTGAATGTAGTGAATTGTTGCATGTGAATTCATTTAGTTGAATTTTCTGGATTTAAAATAAAAATTACTATAGAATATATAAAAAATAGTGCTACAATAAAAACTACCTCTATAATGAAATTGCAAAGCACAATATAGAATAAAAATGTAAAAAGAAACAATAACCGTCTAACCTAAATATATTGTAGTTAGACATTTACCAACTAAAATGTTATACTTATCATGCTTAATTTACCAATAAATCATAATTTCAAGAAACAAGTATTTTATAAAATCCCCAATACTTCCGAAAGAAATACAAAATATAGTTGTTTAAAATAATTTGCATTATTTTGCATATGAAAATGTAATAGAAAACTTCACATTATGTATATAATTGGTAGGTCCCTTAAGCAATGCATAGCAGGCTTGTACTAATACAAGAGCCACAAATCTGCTAAACAATTTTTCCCCTAACATAGCGTTTTGATCTGCGTGCAGGTGTCAAGTCAGTTATGGCTTTTCTTTTTCTCTGATGTCTCTGTTTCGCTGTTTGTTGTACTTCTGACTCCTCTGAATCTGATTCATCTTCTTTAGTGTTCTTTTTAGGTTCATGCATTTGCAGTCTCATTGATCTTCGTCTGCTTGAAGATGTACTTGAGCTACTCTGAAGAACATGCTTTTCAATGTCAAGACCTTTCTCATCCTCATCAGAGATATTTTCTTCACCTTCATCAGATTTTTCTGCAGATGTGAATATGTCTTTTGTGGCCTCCATGGCCACTCTGCTCTCCTCATCTGCTTTGTTTTCTTCTTGATCAGATGTTTCCTCTACTTCCAACGCTAAAGTGAAGCCCTCATTTGTACTGGACTCAAGCTTTTGCTTTTCTGTCTCCACATGTTGCTCTATCACTTCCTCCATTTCACCCGTCTCTTCTACTTTCTTGCTATTTTGCTCCATAACCTCTTCGTTATCCTCATCTGTCTGAGGTTTATTTACTTTTTTCTCTTTCTGCTCCTCTTGAGATTCACCTGCATCTGTCTTGGTGTCTTCATGTATATTACAATCTCCATCTGATTTAGTCCCTTTCTGGATTATCTGTTGTATTTCTCCACCCAAATGACTGCCCTCAAAAACTGCTGCAGGTACATCTGAGCTCAGCTCTACATTATCTGCTGTAAATGTCACTTCAACTGTCTCAGTTTGTTCCATAACTGCCTCCTTGACTTGCTCGCTATCGTCATCATGCTCTCGTTTGCGAAGACGTTTTGATTTTCTTGGAGCAGCTATTTCAACAGTCAGTCTTTTTCTCAGGGTTCTGCTTTCCACTGCTGTTTCCTCCAAACCAAAAGAACTTCCTTGCACTGCGTCTTCATTTTCTCTTTCCTGGAGTGGTTTCTCTTCCTCCTGTACACTTGAGACCTCATCCTCCTGTTCCTTAGGCACCTGTACATCTCTCTCAAAATTTTCCTCTTGAGTCTTGTTCTGCTTAGTGTTTTCTGGGCTGGCACTGTTACTTTCATTGATTTCAAACAGGACTTCATTTCCTTCCTCTACAGCATCATCTTTTGTCCCTGTTTCATCTGCCTTTCCTTCTATATTTTCCTGAATAATGCCTTCTCCTTCTTTTGTCTTCAAATTTTCAAATTCAGCAATGCTCTCCTCAGCATTTAATGCCTTATTCTCCTTCTCTATAGGGATATTTAAATCATCAGCTGATTCCTGTATTGCTGAGTCATTTTCATTTCCACATATGTTGTCCTTTGTTTCTTTTTCTGACTCCACCACTTGTCTGTGGAGGTGTTTTGATTTTCTTCTTGGTGTAGACTGGACTGTTACTGTTCGGTATCTGAGACTTCTTCTTGTAATGAAGGGTGCTTCTTGATCCGAGCTTTCTAAAACAACCTTCTCCTCCACAGCGGTTGTCTTAAGTTCATTCGTCGGAGTGGTTTCCCCTACATTTTCCTCTTTTGACAGTGCTGCTTCTTGTTGAGCAACATCCTCTTCTACTGAGCTTGTTCTTTCGTTCTCCTGAATATTCTCCTCATGTTTCTGGCCTGTGTTTTCCTGTGGAGGCTCCACTTTTTCTTCATCTTGAACTCCCCCCTCTACAATTTTTTGTGTTTTATCAATTTCCACCAGAATTTCATTTTCAGTTGTTTTAATTGAGCTCTTGGTCTCATCTTCTTCATCATCTGTAGATTTGTCAGGCAAAGCTTCATCCACCTTTCCCTTATCATTTGATATGTCTATCTCTTGCTCATATGAAGTAGTTTCCACCTTTCTACTCATGGAAACCATATCTCCATCTCCATCTTTATCAAGACTTTCCACATTGGCCTCTACTGTAATAATTGGTACACAGACATTCACAGTCTCAACTGTCGTTGATGGGCTTTCTTCATTTCCACTCATATCTGCTTCTTTCACTGGTTCCAACTCTGCTGTGTGGAGACGTGTAGATTTTCTTGTCTTCTGTGTAGATGTGACTGACTGTGCACTGATCCTCACACTTCTCCTTGTGATTCTTTCGCTTTTATTTTCATTGGTTTCAGAGCTTTCCATCTGCGCGACCTTCTCCTCTACTTGAATGGCAGTCTCCTCTATATTGCATGTTTGCTCCTTGCAAACCACTGAAACTTTATCCACCTCCATGGGTTTTTCTGCCTCGGCTGTTTCTTTCTCATTTTTAACCAATCGCTCATTTTCATGTTGCTCTAAATTGGCATCTTCTCTTCCCATCTCAGGAGCCGCATCATTCTCTGAGCTTGTTTCCTTGATCTCCATCCTGTTGATTTCTTCAAATCCTTTTTCTATTACATCCTCATCAGGTTCTCCTTCTACAAGTGGGATAATCTTCTCAGTATCCTCTTCCACCGGCTCCAACACAGCTAAATTTGCTTCCTTGTTCTCCATCTTGTTGACCTCTTGATCCATTTCTTCAACTGTCTTTTCTGTCATTGAAATTGATTCAGTTTTACTCTGGTTCACCACTGTGTGTCTTTCTTGATGTTCAACATCTGCTTCAGCTTCTTGTTTTTGTACACGTCTAGATTTCCTTCTTGGTGGTGACTGAACTTTTATTGTTCTATGTCTGAGACTTCTCTCTGTGCTGACTGGAACCTCCTCTTCTAAGATTTCCTGGATAGCTTCTGGTGCCTCCTGAGTAAGACCACTAATTTCTACATCACTGTCCATTTGTTTCTCTTTTAAAGCAATATCTTGATCATTTTCTGCCATTGTTGTTGCTTCTGGATGCTCTTTAGATGTTACAGCTTCTTCCATATCCTCATCTATGACTGCCTTATATTCCTCTACAATCTCCTTTACATCATTTTGTCCTTCCAAATCTTCTGTTGGTTTCTGCTTCTCAAATGTCATGTCTTGTTTATCATGTTTATTCTGTTCTTCAACTGTGTTTTCTTCCTCCATTTTGTTCTCTTCTTCCTCAGGGGTCTTTTCAGTATCTTCCTCTTTTTGTAGTTCTTCTTGCTGTTCCTCATGTTCTGATGTCTGTATACATTGTTGATATTCACTTTTATCTGGTTCATCCAGTTCCAGTTGTTCCTCTGTCTGGGAATGCGTTAGGACTTCTGGAGTGTCACACTCTCCTTCTCTATTTTGGGAAAGGTTGTTTAAATCTACAAGTATTACTGTGGCTTTTTGCAGCTGTATTATTGGAATACCATAATCTTTCTCTACCTCCTCATGAGGTTCTGCTTCTACAAATGTGACCTCCTCTAGTATCTGAGGTGCCTCCTTTTTATCATCTGTTTCTACACTTATCCGTTCAGAAGTCTCAGGTTCAACAGCTGTAGTTTCTTCAAGATTTGTCTTTGCTATTTCACCAATACTTTCCAAATTGGGCTCTAATGTAATTACTGGTATACACACGTTCACAGTCTCTTCTGTCTTTGCTGAGGTTTCTTCACATTTATTTCCACTCATATCTGCTGCTTTTACTTGTTCCAAATCTGCTTTGTGGAGACGTGTAGATTTTCTGGTCTTCTGTGTAGATTCTGTGACTGATTTTGCACTGAGCCTGAGACTTCTCCTTGTGATCCTTTCATTGTCACTTTGATTGGTTTCAGTGCTTTCCACCTGTGAGGTCTTCTCCTCTATTTGAATGGTGGTCCCCTCTATAATGTACATTTGCTTCTTGTTAACCACTGGGTCAATTTCCATGGGGTTTTCTGTCTCAGCTGTTTCTTTTTCATTTTTAATAAATGGTTCATTTTTCTGTTGCTCTAAATTGGCTTCTTCTCCCATCTCAGGTGCCTCCTCAACTATGTCCTTTGTCACAGCTAAATTTGTTTCCTTGTTCCCAGCTTCTTTTTCTACCACATCCTCTTCAGGTTCTGCTTCTACAAATTCATCCTCATTCTGATTGTTTTCATTTTTATTGCTTTCCACCAAGTTGCTCTGAGCTGGCATTGTGGCTAAATCTTCTATTGGCTTTTGCTCCTCAAATGTCATGTCTTGTTCATCGAGTTTGTTCTGCTCTTCAACTGTGATCTTTTCTTCCTCTATTTTTTCTTCCTCGGGGATCATTTCAGTGGCTTCCTGTGTTTGTATTTCTTCTTTTTGTTCTTCCTCTTCTGATAACAGGTTGCACAGTTCTTGTTCACTTTTATCTGGTTTATCAAGTTCCAGATGTTCCTCCATTTGGGAATGTTTTAAGATTTCTAGAGTCTCAACCTCCTCTGTATTTTGAGAAAGTTTGTTCAAATCTACAAGTACTACTGTGGCTTTTTGTAATGTTATTACTGGAGTACCATCCTCTATCCCTGTCTCCTCATCAGGTTCTGCTTCTTTTTCTTGATCATCTATTTCTACATCCATCATTAGCTCGGATTTCTCAGTATCAACAGCTGCAGTTTCTACAGTTTTTATATCAAGACTTTCAAAACTGGTCTCTGTTGTAATAATTGGTACACAGACATTCACAGTCTCTTCTGTTGATGCTAAAGTTTTTTCATCTTCATTTCTAATCATGTCTGGTTCTTCTAACTCAGCTAAATTTATTTCCTTTTTCTCCATTTTGTTGATTTCTTCAAATCCTTTTTCTGTTGCATCCTCATCAGGTTCTCCTTCTACAAGTGGGATAATCTTCTCAGTATCCTCTTCCACTGGCTCCAACTCAGCTAAATTTGCTTCCTTGTTCTCCATCTTGTTGACCTCTTGATCCATTTCTTCAACTCTCTCTTCTGTTGTTGAGACTGATTCAGTTTTACTCTTGGTCACCACTGCATGTCTTTCCTGATGTTTAACATCTGCTTCAGCTTCTTGTTTTTGTACACGTCTAGATTTCCTTCTCAGTGGAGACTGAACTCTTATTGTTCTACATCTAAGACTTCTTTCTGTCCTGACTGGTACCTCCTCTTCCTGGACATTTTTCTCCTGAGCAAGACTGCTCATCTCTATACCACTGTCTGTTTGTTCAGCTAAATTTGCTTCCTTGTTCTCCATCTTTTTGGTTTCTTTGACTTTTTCTGTTACATCCTCATCAGTTTCTGCTTCTACAAGTGGGATGTCCTCCTCAGTACCTTCTGTAATCTGTGGTGTTTTCTCTTTGTCATCTATTTCTGTAGCTTTCAGCAGTTCAGAACTTCCAGTTTCAATGACTATTGTTTCATCAACATTTGTGTTTGCCTTTTCACTCTCCTCTAGACCTACTTTTTCTGCAATAACTTCATCCCTTTCTGGGTTTTCATCAGTCCTGAATTTTGCCTCAACTTGTGGCTCAACACTTTCCATCTGCTGAATCACTACTTTGCTACGTGTAGATCTCCTAACAGGGGTGATCTTGATTGGTTTCAAAGTGCTTCTGAGACATCTAACTGTCGCCCCAGGGTCAACAGGTTGATCTCTAAGACTTGTTGATCTACTTGGGGTGTCAGTAGATCCTTTCTTTTGAGCTTGTTTGCCTTGTTTGGGAATCAACGTATCTGCCTCATATGAAGTTTGTGCATCCTCTTTAGCTTGTTCAGTGTCTGTTTTCTCCTCTGGTTTCTCAACTTGGCTTAGAAGAACAACCTCTGTGGTTTCAGGTTCTGGTTCACCCTCTTGTTCTTTGTATCCAGTTGATTGTTCTGGAGTTATTTTGGCATCAGCTGCTGCATTATATCCTTTTCTTGTGTCCAGTGTACCATCTTGTTCCTCCATTCTCATAATTTCTTCAGCTGCTTGTTTCTCAGTTGACACTGTGTGCTTCATTTCATCTTGTTCAGCAATATCTATCTCTCCGTGATTATCACTTGCCTCTTTAGGAGAAAGTTTGGCTTCACTCAGTGTCAACATCATAGAGCTATTCTCCACTGTCTCCTCATCCTCTTCAGGTGTTGTTTTCAATTTGTGTACCTCAGCAGACTCTACAGATGACTGTTGTGGTGCTTCTTCTTGGTCTATTTCTGAAATTTCAGGAACTACATCTACAGTTTCCCCAACCTGTGTGATTTCAGCATCCATAGTAGAATCCGTTTCCACTGTAAGCTTGTCTTTTTCTTTGTATTCCTCAACCTTAGACTCTTTTACTTTGTTAGCAAGAGTCCCTGATTGATCTGTCACCTCTTCTAAAGCTTCAGTATTGTTATATGTTTCAACAATCCCACTCAAAGCCTTTTCCTCTTCAGGTTCATCCAGCATTTGCTTTATTTCCTCCTTCTCTGCCTCACACACAGGTTTATGTTTCTCAACCTTTTTGTTCTTTTCTAAATTCTCAATTTGTTCCTCTTCAGTTCCTGTACTCATCTTGACAATTTCTATATCCACCACAGACTGAAGTTGGCTTTGGTCAATAGACCCTATAGTGGCTCTTTGTATTACTACAGTTTGCTCCTTATTAACCATTTCACATTCCTTTTTACTGCCTTCTTGGCTCTTTATTTCCCCAGCTGTGGTGAAGTGGGTGACTGGAGTCCCCTCTGATGTAGCTGTGACTTTGTCTTTTTCAATTTCCCATTCCTCCTCTTTCTGTGAACTTCTAACCTCTGAAATATT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU329243 lncRNA downstream 6949 264677 ~ 265448 (-) False G290258
TU329242 lncRNA downstream 6949 265067 ~ 265448 (-) True G290258
TU329236 lncRNA downstream 20464 251668 ~ 251933 (-) True G290252
TU329186 lncRNA downstream 72778 198709 ~ 199619 (-) True G290203
TU329188 lncRNA downstream 106923 164571 ~ 165474 (-) True G290205
TU329184 lncRNA upstream 10714 290561 ~ 297997 (-) True CI01000080_00292016_00307681
TU329355 lncRNA upstream 220542 500389 ~ 501638 (-) True G290360
TU329356 lncRNA upstream 221957 501804 ~ 502067 (-) True G290361
TU329357 lncRNA upstream 222479 502326 ~ 503408 (-) True G290362
TU329546 lncRNA upstream 288706 568553 ~ 568756 (-) True G290528
CI01000080_00202124_00211154.mRNA mRNA downstream 61243 201941 ~ 211154 (-) True CI01000080_00202124_00211154
CI01000080_00118423_00142677.mRNA mRNA downstream 129720 118423 ~ 142677 (-) True CI01000080_00118423_00142677
CI01000080_00103467_00104168.mRNA mRNA downstream 168209 103316 ~ 104188 (-) True CI01000080_00103467_00104168
CI01000080_00000621_00005854.mRNA mRNA downstream 266543 547 ~ 5854 (-) True CI01000080_00000621_00005854
CI01000080_00292016_00307681.mRNA mRNA upstream 11899 291746 ~ 307681 (-) False CI01000080_00292016_00307681
CI01000080_00309567_00317169.mRNA mRNA upstream 28199 308046 ~ 317669 (-) True CI01000080_00309567_00317169
CI01000080_00318151_00318865.mRNA mRNA upstream 38037 317884 ~ 318865 (-) True CI01000080_00318151_00318865
CI01000080_00319743_00328159.mRNA mRNA upstream 39896 319743 ~ 328159 (-) False CI01000080_00319743_00328159
CI01000080_00328119_00328700.mRNA mRNA upstream 48272 328119 ~ 328700 (-) False CI01000080_00328119_00328700
TU329248 other upstream 46946 327689 ~ 329517 (-) True G290261
TU329309 other upstream 128038 407885 ~ 408144 (-) True G290314
TU331407 other upstream 1355915 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 1355915 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 2238231 2518078 ~ 2525409 (-) True G292349

Expression Profile