RNA id: TU329553


Basic Information

Item Value
RNA id TU329553
length 209
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G290535
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 611018 ~ 611226 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTTAGTTCAAAATAAAGATGCTGAAATATGTTACCAATCAAATGCATAATAGTGACAGATTAAAGTGACAGTCAGCCAAAAATACAGCACATAAAAAAATAGGAGTAGGGCCTTTGCGTTACTAAATAATTCAGAATAGCTGTACACCGTATTAAAGCATCAGTTTGTCTGGACTTCGAGAAGACTGTCATGCATACTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329548 lncRNA downstream 28884 581856 ~ 582134 (-) True G290530
TU329547 lncRNA downstream 29326 581459 ~ 581692 (-) True G290529
TU329546 lncRNA downstream 42262 568553 ~ 568756 (-) True G290528
TU329357 lncRNA downstream 107610 502326 ~ 503408 (-) True G290362
TU329356 lncRNA downstream 108951 501804 ~ 502067 (-) True G290361
TU329532 lncRNA upstream 35026 646252 ~ 647492 (-) False G290517
TU329533 lncRNA upstream 35026 646252 ~ 647515 (-) True G290517
TU329540 lncRNA upstream 118774 730000 ~ 735161 (-) True G290522
TU329633 lncRNA upstream 187216 798442 ~ 798929 (-) True G290606
TU329643 lncRNA upstream 218222 829448 ~ 829648 (-) True G290616
CI01000080_00597523_00605227.mRNA mRNA downstream 4566 597315 ~ 606452 (-) True CI01000080_00597523_00605227
CI01000080_00521848_00524367.mRNA mRNA downstream 86628 521081 ~ 524390 (-) True CI01000080_00521848_00524367
CI01000080_00330537_00333221.mRNA mRNA downstream 277797 330242 ~ 333221 (-) True CI01000080_00330537_00333221
CI01000080_00328119_00328700.mRNA mRNA downstream 282318 328119 ~ 328700 (-) False CI01000080_00328119_00328700
CI01000080_00319743_00328159.mRNA mRNA downstream 282859 319743 ~ 328159 (-) False CI01000080_00319743_00328159
CI01000080_00614889_00638900.mRNA mRNA upstream 2636 613862 ~ 640684 (-) True CI01000080_00614889_00638900
CI01000080_00670914_00678760.mRNA mRNA upstream 59523 670749 ~ 678760 (-) True CI01000080_00670914_00678760
CI01000080_00699809_00719764.mRNA mRNA upstream 88399 699625 ~ 719764 (-) True CI01000080_00699809_00719764
CI01000080_00737755_00742405.mRNA mRNA upstream 126285 737511 ~ 742647 (-) True CI01000080_00737755_00742405
CI01000080_00861858_00877122.mRNA mRNA upstream 250519 861745 ~ 877638 (-) True CI01000080_00861858_00877122
TU329309 other downstream 202874 407885 ~ 408144 (-) True G290314
TU329248 other downstream 281501 327689 ~ 329517 (-) True G290261
TU329180 other downstream 331171 272397 ~ 279847 (-) True G290197
TU331407 other upstream 1024536 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 1024536 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 1906852 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 2122361 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 2597759 3208985 ~ 3218158 (-) False G292516

Expression Profile