RNA id: TU330014


Basic Information

Item Value
RNA id TU330014
length 245
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G290947
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1083121 ~ 1083365 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAACTTTACACTTGGCACAATGCAGTCAGGCAAGTACCGTTCTCCTGGCAACCGCCAAACCCAGACTCGTCCATCGGATTGCCAGACAGAGAAGCGTGATTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGATGGCGTGCTTTACACCACTGCATCCGATGCTTTGCATTACACTTGGTGATGTAAGGCTTGGATGCAGCTGCTCGGCCATGGAAACCCATTCCATGAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330012 lncRNA downstream 10669 1072245 ~ 1072452 (-) True G290945
TU330008 lncRNA downstream 36756 1046089 ~ 1046365 (-) True G290941
TU329961 lncRNA downstream 63563 1019295 ~ 1019558 (-) True G290902
TU329679 lncRNA downstream 141054 941861 ~ 942067 (-) True G290652
TU329659 lncRNA downstream 228403 854171 ~ 854718 (-) True G290632
TU330016 lncRNA upstream 6700 1090065 ~ 1091112 (-) True G290949
TU330018 lncRNA upstream 18571 1101936 ~ 1102297 (-) True G290950
TU330019 lncRNA upstream 19292 1102657 ~ 1102947 (-) True G290951
TU330003 lncRNA upstream 83491 1166856 ~ 1167231 (-) True G290936
TU329969 lncRNA upstream 145848 1229213 ~ 1240587 (-) True G290908
CI01000080_01048748_01071339.mRNA mRNA downstream 11782 1048748 ~ 1071339 (-) True CI01000080_01048748_01071339
CI01000080_01037946_01040084.mRNA mRNA downstream 42815 1037844 ~ 1040306 (-) True CI01000080_01037946_01040084
CI01000080_00905794_00918088.mRNA mRNA downstream 162693 905755 ~ 920428 (-) True CI01000080_00905794_00918088
CI01000080_00888517_00897726.mRNA mRNA downstream 185395 887951 ~ 897726 (-) True CI01000080_00888517_00897726
CI01000080_00861858_00877122.mRNA mRNA downstream 205483 861745 ~ 877638 (-) True CI01000080_00861858_00877122
CI01000080_01172564_01172904.mRNA mRNA upstream 88174 1171539 ~ 1172904 (-) True CI01000080_01172564_01172904
CI01000080_01179133_01187378.mRNA mRNA upstream 94837 1178202 ~ 1187378 (-) True CI01000080_01179133_01187378
CI01000080_01207732_01214256.mRNA mRNA upstream 124200 1207565 ~ 1214412 (-) True CI01000080_01207732_01214256
CI01000080_01256819_01266378.mRNA mRNA upstream 173219 1256584 ~ 1266378 (-) True CI01000080_01256819_01266378
CI01000080_01268777_01277656.mRNA mRNA upstream 184838 1268203 ~ 1277997 (-) True CI01000080_01268777_01277656
TU329309 other downstream 674977 407885 ~ 408144 (-) True G290314
TU329248 other downstream 753604 327689 ~ 329517 (-) True G290261
TU329180 other downstream 803274 272397 ~ 279847 (-) True G290197
TU331407 other upstream 552397 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 552397 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 1434713 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 1650222 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 2125620 3208985 ~ 3218158 (-) False G292516

Expression Profile