RNA id: TU330003


Basic Information

Item Value
RNA id TU330003
length 376
lncRNA type inter_gene
GC content 0.24
exon number 1
gene id G290936
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1166856 ~ 1167231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTGATGAATAAAAGGTTAAAAAGAACAGCATTTATTCAAAATATAAATCTTTTCTAACAATATAAATCTTTACTATCACTTTTTATCAATTTAACACATCCGTGCTGAATAAAAGTATTAATTTCTTTCAAAAAAAAAAGAAAAAGAAAAAAAATTACTGACCCCAAACTTTTGAACGGTAGTGTATATTGTTACAAAAGATTTCTATTTTAAATAAATGCTGATATTTTTTTTTTTTTTAACTTTTTATTCATCAAAGAATCCTGAAAAAGTATCACAGGTTATAAAATAATATTAAGCAGCACAACTGTTTCCAACATTGATAATAAATCAGCATATTACAATGATTTCTGAAGGATCATGTGACACTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330019 lncRNA downstream 63909 1102657 ~ 1102947 (-) True G290951
TU330018 lncRNA downstream 64559 1101936 ~ 1102297 (-) True G290950
TU330016 lncRNA downstream 75744 1090065 ~ 1091112 (-) True G290949
TU330014 lncRNA downstream 83491 1083121 ~ 1083365 (-) True G290947
TU330012 lncRNA downstream 94404 1072245 ~ 1072452 (-) True G290945
TU329969 lncRNA upstream 61982 1229213 ~ 1240587 (-) True G290908
TU330072 lncRNA upstream 74430 1241661 ~ 1241903 (-) True G291000
TU330074 lncRNA upstream 77226 1244457 ~ 1244679 (-) True G291002
TU330085 lncRNA upstream 125253 1292484 ~ 1292796 (-) True G291013
TU330086 lncRNA upstream 125699 1292930 ~ 1293246 (-) True G291014
CI01000080_01048748_01071339.mRNA mRNA downstream 95517 1048748 ~ 1071339 (-) True CI01000080_01048748_01071339
CI01000080_01037946_01040084.mRNA mRNA downstream 126550 1037844 ~ 1040306 (-) True CI01000080_01037946_01040084
CI01000080_00905794_00918088.mRNA mRNA downstream 246428 905755 ~ 920428 (-) True CI01000080_00905794_00918088
CI01000080_00888517_00897726.mRNA mRNA downstream 269130 887951 ~ 897726 (-) True CI01000080_00888517_00897726
CI01000080_00861858_00877122.mRNA mRNA downstream 289218 861745 ~ 877638 (-) True CI01000080_00861858_00877122
CI01000080_01172564_01172904.mRNA mRNA upstream 4308 1171539 ~ 1172904 (-) True CI01000080_01172564_01172904
CI01000080_01179133_01187378.mRNA mRNA upstream 10971 1178202 ~ 1187378 (-) True CI01000080_01179133_01187378
CI01000080_01207732_01214256.mRNA mRNA upstream 40334 1207565 ~ 1214412 (-) True CI01000080_01207732_01214256
CI01000080_01256819_01266378.mRNA mRNA upstream 89353 1256584 ~ 1266378 (-) True CI01000080_01256819_01266378
CI01000080_01268777_01277656.mRNA mRNA upstream 100972 1268203 ~ 1277997 (-) True CI01000080_01268777_01277656
TU329309 other downstream 758712 407885 ~ 408144 (-) True G290314
TU329248 other downstream 837339 327689 ~ 329517 (-) True G290261
TU329180 other downstream 887009 272397 ~ 279847 (-) True G290197
TU331407 other upstream 468531 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 468531 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 1350847 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 1566356 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 2041754 3208985 ~ 3218158 (-) False G292516

Expression Profile