RNA id: TU329969


Basic Information

Item Value
RNA id TU329969
length 2628
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G290908
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1229213 ~ 1240587 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAAGTGTAAAAATCCAACATTTGTATATTGGTGAGTCCCTTGGTCTGTAAATGCTGAAATCTGTACTTTCACACATCAGAAAGGAAAGCAGAAATGTGACAAAAGAATTCGCAAGTATTTCAACATTTTTTTATTTTTTGCAAATAACACTAAAAAGGTTTACAAAAGCATTGTAGAAAGATTTGTGCAGTGTAAATTATCAAAACTAAAAATGAATATTACTTGAAATGATTTTGCACCTAACATGACATAAGGATTGTCATTCTCAGCAGCAAAAAATGCAATGCTTCTCAGGAGAATGTGATGAAGTGTTCAGTGTTTTTAAGACCACCCTCAAAGATGTTGAGGAATTTACCAGCCCTGAAATAAAGGCAGAGGGGGGGGGAAAAAAACAACTGCTACACTGCTTACACGTGTTGCTACTTAAGCAAATGAAATAAACAAGGATGGTATGGCACTAAAAGCTCATCCCTGAAGGAGGGCATCATTCATCTAAGAAAAAAAAAAAAGGTTAGATTGCAAATGGAAACTTCCCTTGTACCCATCATGGCACTATGGCAATCTTCCTTAGTGGAACTCAAAGACACTCAGCCTTCCCTTTGTTATTCCAATTGGACAAACAGTTGACAGCTTGAGAGAGTTGTATAACAGGAGATCATTACACAGGATAGGCTCACACCCCACAGATACAACACAAGCCTTTCTCCATCAAAGTTAACAGTTTTTACAACCATATACACTGTTCAGTCTTGAATTTAGAACAATATTCACTTGGTACTACTTAGAAATCTAGAGGAAAATAAAAAGTAAAAATTAAGAAGAAGAAAACAGAAGTGTGCTTGATGACCCCACTGGTAATATTACAAAATAATTAAAAATATAGAAATGAACAAGACCAAAGAAAAGACCTTACAAATTCAGATAATGTACATACCATTGAACATATGAATACATAAATATTTGTTTGTCTGATTACAAAACCTTTTTACTTCATTATAAAATTTACTTTTTACATATCGTTGTATTGCTGTGTCAATACATAATACTGAGTTTCTTTGCACGCTGTGGCAACACTTTACATCTTAAGTTCTTTGCTGTATTAAACATATAAACTCACATAGTATGCTCTGGAAAATATTTTGTTATTTTTTTATTTTTTTATTATTTGCCTTTGTAGACAATGAGGCTCTAATGCTCATGTAAATGGGAAGTCGATGGCACTACAGCTATCTGTGAGGAAAGCAAACAAACCAGTTATCTAATCTTTGGTCAAGCATATAGGGGCAAAAGTCACCGTAAGAAATCTGGAAACTGTATAGAAATGGCTCAGGTTCTTAGATCTTTCATACTCAAGTCACATTTTACGTCCCACCACTTGATACACAATGTTCCAGCGGGGTCTTTGTTCAGCCTAGTATGTTAAGAGAGACTGCCAAAGACAATTTTAATGTAAATTTATATACTATTTGCACTGACAACACTGTAATGGACTAAAGCTTGAATAACTTTCCCTCAGTTTTCTGTTCAGATACAGCTGCATAAGACACTGCAAGCACAGTGTTTCCAGTTTAAATCTTGCACTAAATCTTTACGATAAGCTAAATACGCAACAATGTGCACTGCAATCCACGCAAACCGTGGTTGCAATAGGTAACAGATGGTTTACATCAAGTAAAAGTAACAAACACCAACCATTCCAGCAAGTGTCTCCAAAACAGGAATGATTTACAGACACGCCAGTCTTTAAAACAACAGAGTGCAACTGCACACATGGGTTATGGCAACTTCAGACAGACAACTGAAAATATTCATTTGGACAAACCCACAGAAATGCATGCGACAACTCATCTTTTGTGATATTTTGTAAAGTGTGCAGCTATCGCATCCTGTTCAAGTTGTTTAAAATATGGCCTCAATTCATTTTTAAGAAGCAATGGCGAACATCAAGGACAGAAAAAGCAACACGAAAAATAAACTCAACAGACACGCAGTGATTCAAGTGCTAGGGTCTTTTTTGCCCACAGAGGGTTAATATTAACCAAACGTGCACAGAAAAAAAAAAAAAAAAAAAAAATAAAAATTTTGCTAGAATCACTGGCCTTAAGTTGAAAAATGCAGTATCATCAAATCAATCATTCCAACATTTAATCTGTGTCAAATCATCGATTCATTCATGGCAAAATTGTGCTTTAAATTTACACTATATTATTACCCAGAGAATAACATAAAAGGTGTCTTTGTTCAAACAGGTCAGATCTTCCATTTAAGAGGACACCTGTCTTTTGAACAGAGGATTTTTTCCACATATATGCTCTGAATGGGAACTCTGTCATTAGGAGCTTTACCATGAGAAAAGTAACTGGTATAGAGCACTGAAGAAAATTTGCAGCTATTCAACTTAATCAACCATGCGTAGTGAAATCAGACTAAAGCTTTTCTTTAAAGTAAGATTATGTTACATCACACTCATTGACTCCCTTTTCTAATCTTTCAGGGTTTCTCAGGAGGTTTGTCTAGGCATATTTTCTTTAAACCACATTGACAAGAGTTCTTAATTACACCTGGTAAAAAAAGGATGATTTTGGTTTTTAAAAGAAGCAGTGCATTTAAAGACACCAATTAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330003 lncRNA downstream 61982 1166856 ~ 1167231 (-) True G290936
TU330019 lncRNA downstream 126266 1102657 ~ 1102947 (-) True G290951
TU330018 lncRNA downstream 126916 1101936 ~ 1102297 (-) True G290950
TU330016 lncRNA downstream 138101 1090065 ~ 1091112 (-) True G290949
TU330014 lncRNA downstream 145848 1083121 ~ 1083365 (-) True G290947
TU330072 lncRNA upstream 1074 1241661 ~ 1241903 (-) True G291000
TU330074 lncRNA upstream 3870 1244457 ~ 1244679 (-) True G291002
TU330085 lncRNA upstream 51897 1292484 ~ 1292796 (-) True G291013
TU330086 lncRNA upstream 52343 1292930 ~ 1293246 (-) True G291014
TU329978 lncRNA upstream 75006 1315593 ~ 1321540 (-) True G290914
CI01000080_01207732_01214256.mRNA mRNA downstream 14801 1207565 ~ 1214412 (-) True CI01000080_01207732_01214256
CI01000080_01179133_01187378.mRNA mRNA downstream 41835 1178202 ~ 1187378 (-) True CI01000080_01179133_01187378
CI01000080_01172564_01172904.mRNA mRNA downstream 56309 1171539 ~ 1172904 (-) True CI01000080_01172564_01172904
CI01000080_01048748_01071339.mRNA mRNA downstream 157874 1048748 ~ 1071339 (-) True CI01000080_01048748_01071339
CI01000080_01037946_01040084.mRNA mRNA downstream 188907 1037844 ~ 1040306 (-) True CI01000080_01037946_01040084
CI01000080_01256819_01266378.mRNA mRNA upstream 15997 1256584 ~ 1266378 (-) True CI01000080_01256819_01266378
CI01000080_01268777_01277656.mRNA mRNA upstream 27616 1268203 ~ 1277997 (-) True CI01000080_01268777_01277656
CI01000080_01298042_01314713.mRNA mRNA upstream 56986 1297573 ~ 1314973 (-) True CI01000080_01298042_01314713
CI01000080_01322747_01325626.mRNA mRNA upstream 81997 1322584 ~ 1325626 (-) True CI01000080_01322747_01325626
CI01000080_01333090_01343070.mRNA mRNA upstream 92503 1333090 ~ 1343070 (-) True CI01000080_01333090_01343070
TU329309 other downstream 821069 407885 ~ 408144 (-) True G290314
TU329248 other downstream 899696 327689 ~ 329517 (-) True G290261
TU329180 other downstream 949366 272397 ~ 279847 (-) True G290197
TU331407 other upstream 395175 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 395175 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 1277491 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 1493000 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1968398 3208985 ~ 3218158 (-) False G292516

Expression Profile