RNA id: TU330100


Basic Information

Item Value
RNA id TU330100
length 207
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G291028
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1481277 ~ 1481483 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAGTTGTTTCTTGGGTTTAGGCAGCAAGGTTATTAATCCTATTTTCATTGTAGGTGATAAACTCTCTTTCTGAATACATTCTACAAATGCATTAAATAATAATTCCCTTATATCCTTCCAAAAATGTTTTAAAAATTCTGTTGACAAACCATCGATACCTGGTGATTTAACGTTTTTCATTTGTTTTAATGCCACATTCATTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330099 lncRNA downstream 644 1480368 ~ 1480633 (-) True G291027
TU330098 lncRNA downstream 1195 1479853 ~ 1480082 (-) True G291026
TU330097 lncRNA downstream 44547 1436229 ~ 1436730 (-) True G291025
TU330089 lncRNA downstream 152876 1328163 ~ 1328401 (-) True G291017
TU329978 lncRNA downstream 159737 1315593 ~ 1321540 (-) True G290914
TU331330 lncRNA upstream 5319 1486802 ~ 1487137 (-) True G292040
TU331333 lncRNA upstream 8812 1490295 ~ 1492803 (-) True G292043
TU331334 lncRNA upstream 13098 1494581 ~ 1494939 (-) True G292044
TU331341 lncRNA upstream 30850 1512333 ~ 1512605 (-) True G292050
TU331381 lncRNA upstream 150581 1632064 ~ 1632272 (-) True G292085
CI01000080_01442459_01464557.mRNA mRNA downstream 14271 1441985 ~ 1467006 (-) True CI01000080_01442459_01464557
CI01000080_01423592_01425914.mRNA mRNA downstream 55363 1422979 ~ 1425914 (-) True CI01000080_01423592_01425914
CI01000080_01396194_01413199.mRNA mRNA downstream 67998 1396156 ~ 1413279 (-) True CI01000080_01396194_01413199
CI01000080_01382486_01387517.mRNA mRNA downstream 93760 1382250 ~ 1387517 (-) True CI01000080_01382486_01387517
CI01000080_01378001_01380645.mRNA mRNA downstream 100632 1378001 ~ 1380645 (-) True CI01000080_01378001_01380645
CI01000080_01500308_01505160.mRNA mRNA upstream 18394 1499877 ~ 1505414 (-) True CI01000080_01500308_01505160
CI01000080_01514171_01520784.mRNA mRNA upstream 32653 1514136 ~ 1520838 (-) True CI01000080_01514171_01520784
CI01000080_01542470_01546061.mRNA mRNA upstream 60756 1542239 ~ 1546783 (-) True CI01000080_01542470_01546061
CI01000080_01584991_01585618.mRNA mRNA upstream 102376 1583859 ~ 1585709 (-) True CI01000080_01584991_01585618
CI01000080_01726615_01730435.mRNA mRNA upstream 244506 1725989 ~ 1730435 (-) True CI01000080_01726615_01730435
TU329309 other downstream 1073133 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1151760 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1201430 272397 ~ 279847 (-) True G290197
TU331407 other upstream 154279 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 154279 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 1036595 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 1252104 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1727502 3208985 ~ 3218158 (-) False G292516

Expression Profile