RNA id: TU331381


Basic Information

Item Value
RNA id TU331381
length 209
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G292085
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1632064 ~ 1632272 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTATAATGGGCCACTTGAAAACATTTATAATATTTTTCCTCACAATAGCACTCCAAAAATGTCTGACAGTATGATTGTTTGTAAACACATGCAGACAAATATCGCCACTACAACCCTTCTGATCAGTGTGGGTTTAATTTTACGAAGATACAATCTCATTTACATTACTGGGCTTTGTTGACAAATAAGTCAATATGGAAGTAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331341 lncRNA downstream 119459 1512333 ~ 1512605 (-) True G292050
TU331334 lncRNA downstream 137125 1494581 ~ 1494939 (-) True G292044
TU331333 lncRNA downstream 139261 1490295 ~ 1492803 (-) True G292043
TU331330 lncRNA downstream 144927 1486802 ~ 1487137 (-) True G292040
TU330100 lncRNA downstream 150581 1481277 ~ 1481483 (-) True G291028
TU331448 lncRNA upstream 15293 1647565 ~ 1648244 (-) True G292114
TU331418 lncRNA upstream 36767 1669039 ~ 1693395 (-) True G292089
TU331457 lncRNA upstream 59108 1691380 ~ 1691674 (-) True G292123
TU331437 lncRNA upstream 90026 1722298 ~ 1723134 (-) True G292103
TU331433 lncRNA upstream 91077 1723349 ~ 1724367 (-) True G292099
CI01000080_01584991_01585618.mRNA mRNA downstream 46355 1583859 ~ 1585709 (-) True CI01000080_01584991_01585618
CI01000080_01542470_01546061.mRNA mRNA downstream 85281 1542239 ~ 1546783 (-) True CI01000080_01542470_01546061
CI01000080_01514171_01520784.mRNA mRNA downstream 111226 1514136 ~ 1520838 (-) True CI01000080_01514171_01520784
CI01000080_01500308_01505160.mRNA mRNA downstream 126650 1499877 ~ 1505414 (-) True CI01000080_01500308_01505160
CI01000080_01442459_01464557.mRNA mRNA downstream 165058 1441985 ~ 1467006 (-) True CI01000080_01442459_01464557
CI01000080_01726615_01730435.mRNA mRNA upstream 93717 1725989 ~ 1730435 (-) True CI01000080_01726615_01730435
CI01000080_01732531_01763618.mRNA mRNA upstream 100118 1732390 ~ 1763618 (-) True CI01000080_01732531_01763618
CI01000080_01954854_01959161.mRNA mRNA upstream 322419 1954691 ~ 1959324 (-) True CI01000080_01954854_01959161
CI01000080_01980939_01981859.mRNA mRNA upstream 348032 1980304 ~ 1982199 (-) False CI01000080_01980939_01981859
CI01000080_01987220_01990307.mRNA mRNA upstream 354226 1986498 ~ 1990697 (-) True CI01000080_01987220_01990307
TU329309 other downstream 1223920 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1302547 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1352217 272397 ~ 279847 (-) True G290197
TU331407 other upstream 3490 1635762 ~ 1671920 (-) False G292089
TU331420 other upstream 3490 1635762 ~ 1663018 (-) False G292089
TU331720 other upstream 885806 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 1101315 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1576713 3208985 ~ 3218158 (-) False G292516

Expression Profile