RNA id: TU331518


Basic Information

Item Value
RNA id TU331518
length 945
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G292176
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1962538 ~ 1966566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGATTGGAGAATTTTCATTTTTTGGGCGGAGTGCCCCTTTAAGGCTAAGAAATTACACACTTTACCTCTAACACCAACGAATTAAGATTTTCTGAACAATTTCTATCATAAAACTCACCTCTGTGGTCTTATCAGCTCAATTTCCAAAGCCTCTGTCACAGTTATGCTTTCCCTCTTCTTTTGGCTTCCTTTCTGCCTGGTTGGTGAATTCAGTGGGCTGCTCTCCACACTTGGTAGCCCAAACATGGTTTCTAGGTATCTTAGTGGAAGTGTCCTGTTAACTGGTGAGTAAATGTAGGCGCCACTCTGCTTTGTCAGAGGCCTTTTATTTCCAACATATGAATGAACCAGCGTCGGCACAGAATCAAACGTTTCCCCCTCCAGAATATACTGCGTTTGAGTATATGTGTCATAAGATCTGAGCTGAACCTTGCTGATGAGGAAATGAAGAGCATTCTGGTTCCAGCAGCAGGTTAAGACATAGTCTCCAATGCTAGTGAGGGAGTCACGGACTAGAAAGTCTCCGTTCCGTTGCACAAGAGACTCAGACACCTCCCAAGGTATGCGACCATGGTACCAGCCATGACTTGATAGGTTACAGCTGCTCAATTTCAGCTCTTTCTCCAACTCCTGCTTTAGTTTGTCTGATGGGGAATTCAGCTGGCATGTCTCTTTAGAAAACTTTACATAAACACCGCTGTTTTCCATGGGACCTGAATGCCTCAGCGCTCAGTGTAGAACTCATTGCTATAGAATTTCTCTTTAATTCCGTTTTTTAAAGTTGTTTAAGTAACTTTAACTGTCATTAACCACTACTAACATGGTCATTAAACTCGGTCCCGCCTGGTGAGAGGAAGTCCATCACTCTTTTGTGTGTATTTCACCAGCAGTACATTGACACGCAGAGCGTCTATTATTCTTTGTTACAATGTTGCAGTATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331430 lncRNA downstream 149566 1812411 ~ 1812972 (-) True G292096
TU331436 lncRNA downstream 237513 1724695 ~ 1725025 (-) True G292102
TU331433 lncRNA downstream 238171 1723349 ~ 1724367 (-) True G292099
TU331437 lncRNA downstream 239404 1722298 ~ 1723134 (-) True G292103
TU331418 lncRNA downstream 269143 1669039 ~ 1693395 (-) True G292089
TU331519 lncRNA upstream 13180 1979746 ~ 1981786 (-) True CI01000080_01980939_01981859
TU331550 lncRNA upstream 26148 1992714 ~ 1992994 (-) True G292197
TU331569 lncRNA upstream 123439 2090005 ~ 2090238 (-) True G292214
TU331602 lncRNA upstream 244277 2210843 ~ 2211065 (-) True G292242
TU331622 lncRNA upstream 297048 2263614 ~ 2266106 (-) True G292262
CI01000080_01954854_01959161.mRNA mRNA downstream 3214 1954691 ~ 1959324 (-) True CI01000080_01954854_01959161
CI01000080_01732531_01763618.mRNA mRNA downstream 198920 1732390 ~ 1763618 (-) True CI01000080_01732531_01763618
CI01000080_01726615_01730435.mRNA mRNA downstream 232103 1725989 ~ 1730435 (-) True CI01000080_01726615_01730435
CI01000080_01584991_01585618.mRNA mRNA downstream 376829 1583859 ~ 1585709 (-) True CI01000080_01584991_01585618
CI01000080_01542470_01546061.mRNA mRNA downstream 415755 1542239 ~ 1546783 (-) True CI01000080_01542470_01546061
CI01000080_01980939_01981859.mRNA mRNA upstream 13738 1980304 ~ 1982199 (-) False CI01000080_01980939_01981859
CI01000080_01987220_01990307.mRNA mRNA upstream 19932 1986498 ~ 1990697 (-) True CI01000080_01987220_01990307
CI01000080_01993914_01996596.mRNA mRNA upstream 26882 1993448 ~ 1996622 (-) True CI01000080_01993914_01996596
CI01000080_02015292_02021186.mRNA mRNA upstream 47818 2014384 ~ 2021587 (-) True CI01000080_02015292_02021186
CI01000080_02057026_02085109.mRNA mRNA upstream 88829 2055395 ~ 2085109 (-) True CI01000080_02057026_02085109
TU331407 other downstream 290618 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 299520 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 1554394 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1633021 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1682691 272397 ~ 279847 (-) True G290197
TU331720 other upstream 551512 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 767021 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1242419 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 1242668 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 1242668 3209234 ~ 3218403 (-) False G292516

Expression Profile