RNA id: TU331569


Basic Information

Item Value
RNA id TU331569
length 234
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G292214
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2090005 ~ 2090238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGGTCAAAATGTTATGCCTGATCGGTGTATGCAAGATATTGTTTTAATGTCCTTTTCCGCTGGTATTATGTATGAAAAAAAATAAAAATAAAAATTACCATTGTCTGACAAGCGCTGCAGGTTTAGTAGCATTATGTCGTAGTGAATGCGACAGAGAACCTGGTTCTCTATCAAGCCGAACTCCTCCCCTGTAGAAAGCTGCCTTTTACAGAAGATGCAAGCGAAGCAGGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331550 lncRNA downstream 97011 1992714 ~ 1992994 (-) True G292197
TU331519 lncRNA downstream 108219 1979746 ~ 1981786 (-) True CI01000080_01980939_01981859
TU331518 lncRNA downstream 123439 1962538 ~ 1966566 (-) True G292176
TU331430 lncRNA downstream 277033 1812411 ~ 1812972 (-) True G292096
TU331436 lncRNA downstream 364980 1724695 ~ 1725025 (-) True G292102
TU331602 lncRNA upstream 120605 2210843 ~ 2211065 (-) True G292242
TU331622 lncRNA upstream 173376 2263614 ~ 2266106 (-) True G292262
TU331709 lncRNA upstream 400876 2491114 ~ 2517180 (-) True G292339
TU331769 lncRNA upstream 643349 2733587 ~ 2736867 (-) False G292387
TU331802 lncRNA upstream 662897 2753135 ~ 2754628 (-) False G292409
CI01000080_02057026_02085109.mRNA mRNA downstream 4896 2055395 ~ 2085109 (-) True CI01000080_02057026_02085109
CI01000080_02015292_02021186.mRNA mRNA downstream 68418 2014384 ~ 2021587 (-) True CI01000080_02015292_02021186
CI01000080_01993914_01996596.mRNA mRNA downstream 93383 1993448 ~ 1996622 (-) True CI01000080_01993914_01996596
CI01000080_01987220_01990307.mRNA mRNA downstream 99308 1986498 ~ 1990697 (-) True CI01000080_01987220_01990307
CI01000080_01980939_01981859.mRNA mRNA downstream 107806 1980304 ~ 1982199 (-) False CI01000080_01980939_01981859
CI01000080_02113135_02116388.mRNA mRNA upstream 22856 2113094 ~ 2116388 (-) True CI01000080_02113135_02116388
CI01000080_02117016_02119929.mRNA mRNA upstream 26548 2116786 ~ 2119929 (-) True CI01000080_02117016_02119929
CI01000080_02122386_02126617.mRNA mRNA upstream 32070 2122308 ~ 2127055 (-) True CI01000080_02122386_02126617
CI01000080_02173438_02187618.mRNA mRNA upstream 83115 2173353 ~ 2188990 (-) True CI01000080_02173438_02187618
CI01000080_02305920_02313082.mRNA mRNA upstream 214784 2305022 ~ 2313082 (-) True CI01000080_02305920_02313082
TU331407 other downstream 418085 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 426987 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 1681861 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1760488 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1810158 272397 ~ 279847 (-) True G290197
TU331720 other upstream 427840 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 643349 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1118747 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 1118996 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 1118996 3209234 ~ 3218403 (-) False G292516

Expression Profile