RNA id: TU331854


Basic Information

Item Value
RNA id TU331854
length 307
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G292449
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2833211 ~ 2833517 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTACTCATAACACTATACTTAGTATTATATTACCTTTGCACCAAATTACAAAAAAACTAGTTAACGCTGCTTTGAGGGTGTTTCTATTACAGCTGCTATGGGAGTGATGATAAAAATGTTTTTTTCTCTCTTCTGACTGGCATTATCAATCGCTCTCTATTTTTTCCCTTTTTAAAGTTTTGAAAACAGTATTGTGGAGTTTTTCTTTTGCTATTTGCACAATTGGAAACACAACAAAATATATTTAATGAAGTCTCTCATTCACCACCATAAAAGTTTACCCAACTATGACGACTTCCGCTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331840 lncRNA downstream 488 2831954 ~ 2832723 (-) True G292435
TU331825 lncRNA downstream 1504 2829113 ~ 2831707 (-) True G292421
TU331828 lncRNA downstream 18317 2811897 ~ 2814894 (-) True G292423
TU331824 lncRNA downstream 21819 2790786 ~ 2811392 (-) True G292420
TU331822 lncRNA downstream 54872 2778071 ~ 2778339 (-) True G292418
TU331856 lncRNA upstream 1311 2834828 ~ 2835176 (-) True G292451
TU331857 lncRNA upstream 1798 2835315 ~ 2835515 (-) True G292452
TU331858 lncRNA upstream 2740 2836257 ~ 2837476 (-) True G292453
TU331865 lncRNA upstream 18344 2851861 ~ 2852074 (-) True G292460
TU331866 lncRNA upstream 18640 2852157 ~ 2852571 (-) True G292461
CI01000080_02675714_02724087.mRNA mRNA downstream 109124 2675714 ~ 2724087 (-) True CI01000080_02675714_02724087
CI01000080_02626826_02665868.mRNA mRNA downstream 167343 2626586 ~ 2665868 (-) True CI01000080_02626826_02665868
CI01000080_02396817_02403243.mRNA mRNA downstream 429968 2396817 ~ 2403243 (-) True CI01000080_02396817_02403243
CI01000080_02377623_02390372.mRNA mRNA downstream 441930 2376786 ~ 2391281 (-) True CI01000080_02377623_02390372
CI01000080_02371817_02374191.mRNA mRNA downstream 459020 2371747 ~ 2374191 (-) True CI01000080_02371817_02374191
CI01000080_02890744_02893801.mRNA mRNA upstream 57017 2890534 ~ 2893801 (-) True CI01000080_02890744_02893801
CI01000080_02901179_02916041.mRNA mRNA upstream 67598 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_02998252_03001018.mRNA mRNA upstream 164591 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_03135523_03147452.mRNA mRNA upstream 301495 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_03187019_03196643.mRNA mRNA upstream 352974 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
TU331774 other downstream 89965 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 307802 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1161291 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1170193 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2425067 407885 ~ 408144 (-) True G290314
TU331945 other upstream 375468 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 375717 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 375717 3209234 ~ 3218403 (-) False G292516
TU332208 other upstream 881964 3715481 ~ 3728010 (-) True G292714

Expression Profile