RNA id: TU331916


Basic Information

Item Value
RNA id TU331916
length 615
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G292498
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3031562 ~ 3032341 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTTTCTTCTTTTTAAAGTAAACAAATCCAACAAATGAAAACATGGAATAACCTGTTATTGTTAATGTCCATCTTATTGCTGCTGGATAACAGGTGTAGTTTCCTGCATCAGATGCTTGTATTTGATGTATTTTTAATTCTCTTGGAACTGCTGGGTTGATGTGAATCCTGTTTGAGCTGAAGTTTGTCATAGTTCTGTTACTGTAGGAGTCATGACTAAAAATAACAGAGTTGTTCATTTTCCATGTTAAATCGTCATCAAACGGGGTTTTGTTGCAGTGAAGTGTAACTGTTTCCCCCATAAGCACTGTTTTGTTGATGTGCTGCCGAATCCTTTGCTCTTGATTGGATTTGGAATAATCTGCATTGGTCAGTAAAGTAATGATGACACACAAATTCAGATGCAGGATCCTGGTTTGAAAAACCTCCATGATCACAGAAGGTAGAAATGAACCTGTCACTCTCCCTTCAACATTTCGAGCACTTCTGATCAACTGAGAGAGTCTGAAGAGAGAAACGAGGGGAAGTGGTTACATGAGAGTGGGACACCACCAAGAACCACTGAGCTCAAGAGAGCAACGTGATGATCAGAGTGTTAAACAGCATAAATACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331913 lncRNA downstream 3052 3028301 ~ 3028510 (-) True G292496
TU331899 lncRNA downstream 47153 2983926 ~ 2984409 (-) True G292486
TU331877 lncRNA downstream 87991 2943228 ~ 2943571 (-) True G292470
TU331873 lncRNA downstream 103536 2927265 ~ 2928026 (-) True G292467
TU331872 lncRNA downstream 103842 2927265 ~ 2927720 (-) False G292467
TU331922 lncRNA upstream 20297 3052638 ~ 3052855 (-) True G292503
TU331924 lncRNA upstream 26755 3059096 ~ 3059348 (-) True G292505
TU331925 lncRNA upstream 27864 3060205 ~ 3060404 (-) True G292506
TU331991 lncRNA upstream 95407 3127748 ~ 3128259 (-) True G292554
TU331994 lncRNA upstream 135446 3167787 ~ 3168032 (-) True G292557
CI01000080_02998252_03001018.mRNA mRNA downstream 29889 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_02901179_02916041.mRNA mRNA downstream 113919 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_02890744_02893801.mRNA mRNA downstream 137761 2890534 ~ 2893801 (-) True CI01000080_02890744_02893801
CI01000080_02675714_02724087.mRNA mRNA downstream 307475 2675714 ~ 2724087 (-) True CI01000080_02675714_02724087
CI01000080_02626826_02665868.mRNA mRNA downstream 365694 2626586 ~ 2665868 (-) True CI01000080_02626826_02665868
CI01000080_03135523_03147452.mRNA mRNA upstream 102671 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_03187019_03196643.mRNA mRNA upstream 154150 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
CI01000080_03199317_03204484.mRNA mRNA upstream 166859 3199200 ~ 3204484 (-) True CI01000080_03199317_03204484
CI01000080_03207204_03212602.mRNA mRNA upstream 174863 3207204 ~ 3212602 (-) False CI01000080_03207204_03212602
CI01000080_03225699_03250598.mRNA mRNA upstream 193226 3225567 ~ 3251467 (-) True CI01000080_03225699_03250598
TU331774 other downstream 288316 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 506153 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1359642 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1368544 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2623418 407885 ~ 408144 (-) True G290314
TU331945 other upstream 176644 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 176893 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 176893 3209234 ~ 3218403 (-) False G292516
TU332208 other upstream 683140 3715481 ~ 3728010 (-) True G292714

Expression Profile