RNA id: TU331994


Basic Information

Item Value
RNA id TU331994
length 246
lncRNA type intronic
GC content 0.54
exon number 1
gene id G292557
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3167787 ~ 3168032 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGCGGCTTCGGTGGGGCTGAATCGAAGGCTCTGCAGGGTTTTAACAAGCTCCTCGGTGAGAGAGGTCAGCCGATTTAGTTGATGCTGGTGAACAGCGAGCTGGTTGGCTTGGGCAGACAGCTCGTTGGTGAGCTGCACAATGACTGCTGGATCGCTGTTCGGCGAAGTCTTCTGTAATGAAGGGTCAACAGAGTGGGGATCCATTTGCAGCTTTTTATTAAGAGCAACCACAACAAGGCAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331991 lncRNA downstream 39528 3127748 ~ 3128259 (-) True G292554
TU331925 lncRNA downstream 107383 3060205 ~ 3060404 (-) True G292506
TU331924 lncRNA downstream 108439 3059096 ~ 3059348 (-) True G292505
TU331922 lncRNA downstream 114932 3052638 ~ 3052855 (-) True G292503
TU331916 lncRNA downstream 135446 3031562 ~ 3032341 (-) True G292498
TU331995 lncRNA upstream 530 3168562 ~ 3168798 (-) True G292558
TU331997 lncRNA upstream 2421 3170453 ~ 3171145 (-) True G292560
TU331999 lncRNA upstream 3966 3171998 ~ 3172205 (-) True G292562
TU332000 lncRNA upstream 4255 3172287 ~ 3172553 (-) True G292563
TU332002 lncRNA upstream 5945 3173977 ~ 3174258 (-) True G292565
CI01000080_03135523_03147452.mRNA mRNA downstream 20335 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_02998252_03001018.mRNA mRNA downstream 166114 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_02901179_02916041.mRNA mRNA downstream 250144 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_02890744_02893801.mRNA mRNA downstream 273986 2890534 ~ 2893801 (-) True CI01000080_02890744_02893801
CI01000080_02675714_02724087.mRNA mRNA downstream 443700 2675714 ~ 2724087 (-) True CI01000080_02675714_02724087
CI01000080_03187019_03196643.mRNA mRNA upstream 18459 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
CI01000080_03199317_03204484.mRNA mRNA upstream 31168 3199200 ~ 3204484 (-) True CI01000080_03199317_03204484
CI01000080_03207204_03212602.mRNA mRNA upstream 39172 3207204 ~ 3212602 (-) False CI01000080_03207204_03212602
CI01000080_03225699_03250598.mRNA mRNA upstream 57535 3225567 ~ 3251467 (-) True CI01000080_03225699_03250598
CI01000080_03259702_03274657.mRNA mRNA upstream 91341 3259373 ~ 3274657 (-) True CI01000080_03259702_03274657
TU331774 other downstream 424541 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 642378 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1495867 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1504769 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2759643 407885 ~ 408144 (-) True G290314
TU331945 other upstream 40953 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 41202 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 41202 3209234 ~ 3218403 (-) False G292516
TU332208 other upstream 547449 3715481 ~ 3728010 (-) True G292714

Expression Profile