RNA id: TU332000


Basic Information

Item Value
RNA id TU332000
length 267
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G292563
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3172287 ~ 3172553 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAAGCTGTTTGCAAGCAGAGAGGGAAAGGTCAGAGTCCCAGTTATCGGCACAAACAGTTCTCCAGACTCCATTAGTGAGCACCTGCAGTACAGAGCTCTTCCCACTCAGGCGCACTGCACAGACAGATGGACACATGACACAGCAACATTCAACGACAGTACTGAATATTAATATAAGTGTGCTGGTGCTCACCGCAACTGAGCTCATCTTCTCCGTGTTCACAGTCTAAATGTCCATCGCACTGTAGCAACATGCTAATACACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331999 lncRNA downstream 82 3171998 ~ 3172205 (-) True G292562
TU331997 lncRNA downstream 1142 3170453 ~ 3171145 (-) True G292560
TU331995 lncRNA downstream 3489 3168562 ~ 3168798 (-) True G292558
TU331994 lncRNA downstream 4255 3167787 ~ 3168032 (-) True G292557
TU331991 lncRNA downstream 44028 3127748 ~ 3128259 (-) True G292554
TU332002 lncRNA upstream 1424 3173977 ~ 3174258 (-) True G292565
TU332004 lncRNA upstream 3997 3176550 ~ 3177035 (-) False G292567
TU332005 lncRNA upstream 4035 3176588 ~ 3177173 (-) True G292567
TU331949 lncRNA upstream 36302 3208855 ~ 3218158 (-) False G292516
TU331948 lncRNA upstream 36681 3209234 ~ 3218158 (-) False G292516
CI01000080_03135523_03147452.mRNA mRNA downstream 24835 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_02998252_03001018.mRNA mRNA downstream 170614 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_02901179_02916041.mRNA mRNA downstream 254644 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_02890744_02893801.mRNA mRNA downstream 278486 2890534 ~ 2893801 (-) True CI01000080_02890744_02893801
CI01000080_02675714_02724087.mRNA mRNA downstream 448200 2675714 ~ 2724087 (-) True CI01000080_02675714_02724087
CI01000080_03187019_03196643.mRNA mRNA upstream 13938 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
CI01000080_03199317_03204484.mRNA mRNA upstream 26647 3199200 ~ 3204484 (-) True CI01000080_03199317_03204484
CI01000080_03207204_03212602.mRNA mRNA upstream 34651 3207204 ~ 3212602 (-) False CI01000080_03207204_03212602
CI01000080_03225699_03250598.mRNA mRNA upstream 53014 3225567 ~ 3251467 (-) True CI01000080_03225699_03250598
CI01000080_03259702_03274657.mRNA mRNA upstream 86820 3259373 ~ 3274657 (-) True CI01000080_03259702_03274657
TU331774 other downstream 429041 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 646878 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1500367 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1509269 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2764143 407885 ~ 408144 (-) True G290314
TU331945 other upstream 36432 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 36681 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 36681 3209234 ~ 3218403 (-) False G292516
TU332208 other upstream 542928 3715481 ~ 3728010 (-) True G292714

Expression Profile