RNA id: TU332005


Basic Information

Item Value
RNA id TU332005
length 586
lncRNA type intronic
GC content 0.44
exon number 1
gene id G292567
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3176550 ~ 3177173 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAATTAAACTCAGATTCGGAGCTGCTCTGCTGTTGTCTCAACACTCAGCACATATCTTGCTTTCAATCAACACAAAATCAGTGTAAGATTGGCTATAAATGATTAAATGGATCAATTACAAGTCAGTTTGAAAATATTGTTTTGACGCCATTGCTGTATATTATTGTAATGATGGGTCGGCAGAGCGGGGATCCATTTGCAAGCTTTATTAAGAACAGTATTTACACAGGTAGACAGGGGCAAAGGCAGGAACATAAACAAGGACAGGCAATGGTCGAGGTAGGCGGCAGACAAACAGAATCAGGGTACAGGCAAGGATCAGGGTAGGCAGCAAACAATCACAGTCCAGGAAACAGGCAAAGATCAGGGCAGGCAGTAAGGGTCACAGAGAATAAACAATCCAAACGGAAACCAGGAAACAGTCCACAAGAAAACGCTCAGTAATGATCACAACAGCAAATCAAGACTTCGCCCTGAGGTGGTGTGTGTGTAAGTCCTTTATAGTCCAGGTAGTGTGCTAAGCTGTATGTGGCAACTGGTGATTGGTGTGGAGTGTGCATGTGATTGGCAAGGAGGATTATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332002 lncRNA downstream 2330 3173977 ~ 3174258 (-) True G292565
TU332000 lncRNA downstream 4035 3172287 ~ 3172553 (-) True G292563
TU331999 lncRNA downstream 4383 3171998 ~ 3172205 (-) True G292562
TU331997 lncRNA downstream 5443 3170453 ~ 3171145 (-) True G292560
TU331995 lncRNA downstream 7790 3168562 ~ 3168798 (-) True G292558
TU331949 lncRNA upstream 31682 3208855 ~ 3218158 (-) False G292516
TU331948 lncRNA upstream 32061 3209234 ~ 3218158 (-) False G292516
TU331950 lncRNA upstream 32061 3209234 ~ 3209562 (-) True G292516
TU332032 lncRNA upstream 163898 3341071 ~ 3373532 (-) False G292590
TU332033 lncRNA upstream 163898 3341071 ~ 3380066 (-) False G292590
CI01000080_03135523_03147452.mRNA mRNA downstream 29136 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_02998252_03001018.mRNA mRNA downstream 174915 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_02901179_02916041.mRNA mRNA downstream 258945 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_02890744_02893801.mRNA mRNA downstream 282787 2890534 ~ 2893801 (-) True CI01000080_02890744_02893801
CI01000080_02675714_02724087.mRNA mRNA downstream 452501 2675714 ~ 2724087 (-) True CI01000080_02675714_02724087
CI01000080_03187019_03196643.mRNA mRNA upstream 9318 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
CI01000080_03199317_03204484.mRNA mRNA upstream 22027 3199200 ~ 3204484 (-) True CI01000080_03199317_03204484
CI01000080_03207204_03212602.mRNA mRNA upstream 30031 3207204 ~ 3212602 (-) False CI01000080_03207204_03212602
CI01000080_03225699_03250598.mRNA mRNA upstream 48394 3225567 ~ 3251467 (-) True CI01000080_03225699_03250598
CI01000080_03259702_03274657.mRNA mRNA upstream 82200 3259373 ~ 3274657 (-) True CI01000080_03259702_03274657
TU331774 other downstream 433342 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 651179 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1504668 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1513570 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2768444 407885 ~ 408144 (-) True G290314
TU331945 other upstream 31812 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 32061 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 32061 3209234 ~ 3218403 (-) False G292516
TU332208 other upstream 538308 3715481 ~ 3728010 (-) True G292714

Expression Profile