Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU332034 |
| length | 3932 |
| lncRNA type | antisense_over |
| GC content | 0.35 |
| exon number | 4 |
| gene id | G292590 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000080 |
| NCBI id | null |
| chromosome length | 5175454 |
| location | 3341071 ~ 3380066 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU332032 | lncRNA | downstream | 758 | 3341071 ~ 3373532 (-) | False | G292590 |
| TU331949 | lncRNA | downstream | 156132 | 3208855 ~ 3218158 (-) | False | G292516 |
| TU331948 | lncRNA | downstream | 156132 | 3209234 ~ 3218158 (-) | False | G292516 |
| TU331950 | lncRNA | downstream | 161377 | 3209234 ~ 3209562 (-) | True | G292516 |
| TU332005 | lncRNA | downstream | 197117 | 3176588 ~ 3177173 (-) | True | G292567 |
| TU332042 | lncRNA | upstream | 3647 | 3383713 ~ 3386192 (-) | True | G292596 |
| TU332052 | lncRNA | upstream | 11721 | 3391787 ~ 3423582 (-) | True | G292606 |
| TU332072 | lncRNA | upstream | 36358 | 3416424 ~ 3453582 (-) | True | G292623 |
| TU332099 | lncRNA | upstream | 83674 | 3463740 ~ 3464208 (-) | True | G292650 |
| TU332068 | lncRNA | upstream | 149319 | 3529385 ~ 3541856 (-) | True | G292620 |
| CI01000080_03309401_03310494.mRNA | mRNA | downstream | 63796 | 3309337 ~ 3310494 (-) | True | CI01000080_03309401_03310494 |
| CI01000080_03259702_03274657.mRNA | mRNA | downstream | 99633 | 3259373 ~ 3274657 (-) | True | CI01000080_03259702_03274657 |
| CI01000080_03225699_03250598.mRNA | mRNA | downstream | 122823 | 3225567 ~ 3251467 (-) | True | CI01000080_03225699_03250598 |
| CI01000080_03207204_03212602.mRNA | mRNA | downstream | 161688 | 3207204 ~ 3212602 (-) | False | CI01000080_03207204_03212602 |
| CI01000080_03199317_03204484.mRNA | mRNA | downstream | 169806 | 3199200 ~ 3204484 (-) | True | CI01000080_03199317_03204484 |
| CI01000080_03390711_03395563.mRNA | mRNA | upstream | 10561 | 3390627 ~ 3395563 (-) | True | CI01000080_03390711_03395563 |
| CI01000080_03421006_03421194.mRNA | mRNA | upstream | 40709 | 3420775 ~ 3421194 (-) | True | CI01000080_03421006_03421194 |
| CI01000080_03460127_03482686.mRNA | mRNA | upstream | 80061 | 3460127 ~ 3482686 (-) | True | CI01000080_03460127_03482686 |
| CI01000080_03546606_03550758.mRNA | mRNA | upstream | 166225 | 3546291 ~ 3550966 (-) | False | CI01000080_03546606_03550758 |
| CI01000080_03599356_03610857.mRNA | mRNA | upstream | 219057 | 3599123 ~ 3610942 (-) | True | CI01000080_03599356_03610857 |
| TU331947 | other | downstream | 155887 | 3209234 ~ 3218403 (-) | False | G292516 |
| TU331945 | other | downstream | 156132 | 3208985 ~ 3218158 (-) | False | G292516 |
| TU331946 | other | downstream | 156132 | 3209234 ~ 3218158 (-) | False | G292516 |
| TU331774 | other | downstream | 631044 | 2733587 ~ 2743246 (-) | True | G292387 |
| TU331720 | other | downstream | 848881 | 2518078 ~ 2525409 (-) | True | G292349 |
| TU332208 | other | upstream | 335415 | 3715481 ~ 3728010 (-) | True | G292714 |
